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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGTTGCTAAGAGCATTGAATTCAAGGATAAAGTCAAGAACATCGGTGCCAGTCTCGTAAAGCAGGTTGCCAATGCTACCAATGATGTGGCTGGTGACGgtaagccattatatccgtactgggttatactttattgttaaatcttcagcattgactactttgttattaaacaaatggtaataatgagggaacattctaattggcag

Basic information

species Glycine max
transcript GLYMA10G33680.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G33680.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 4
ACCGTTGCTAAGAGCATTGAATTCAAGGATAAAGTCAAGAACATCGGTGCCAGTCTCGTAAAGCAGGTTGCCAATGCTACCAATGATGTGGCTGGTGACGgtaagccattatatccgtactgggttatactttattgttaaatcttc----agcattg-actactttgttattaaacaaatggtaataatgagggaacattctaattggcag
|| ||||| ||||||||||| |||||||||| |||||||||  | ||||| || || |||||||||||||| ||||| |||||||||   ||||| || |||| | |  | ||   ||||     | |     ||  ||    ||||    ||||||  || |||||| |  || |    |   || |||    || |||   |        
ACTGTTGCCAAGAGCATTGAGTTCAAGGATAGAGTCAAGAATGTTGGTGCAAGCCTTGTAAAGCAGGTTGCTAATGCGACCAATGATACTGCTGGAGATGgtatggc--tgtacttgtaccattctgttgagaatacttggtccttctgttagcattctacaactttggttatatat---tataaacaattccagaccatctcat-------

upper sequence: GLYMA10G33680.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G23990.1 (Arabidopsis thaliana), 5'ss of exon 3
ACCGTTGCTAAGAGCATTGAATTCAAGGATAAAGTCAAGAACATCGGTGCCAGTCTCGTAAAGCAGGTTGCCAATGCTACCAATGATGTGGCTGGTGACGgtaagccattatatccgtactgggttatactttattgttaaatcttcagcattgactactttgttattaaacaaatggtaataatgagggaacattctaattggcag
|| ||||| || || ||||| ||||| || ||| | |||||| | ||||| ||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||  |||  ||             |  || ||| |    |    ||   |    ||||||  |  ||  |  |   |||  |     ||| |   |    |   
ACTGTTGCCAAAAGTATTGAGTTCAAAGACAAAATTAAGAACGTTGGTGCTAGTCTTGTGAAGCAGGTTGCAAATGCTACTAATGATGTTGCTGGTGATGgtaagatatttcattt-----------tgattgattatgcggttcatagttgtagaaactttgcaa--aactatgtaccaatgcttgtttaacttgtcatgcag---

upper sequence: GLYMA10G33680.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 4
ACCGTTGCTAAGAGCATTGAATTCAAGGATAAAGTCAAGAACATCGGTGCCAGTCTCGTAAAGCAGGTTGCCAATGCTACCAATGATGTGGCTGGTGACGgtaagccattatatccgtactgggttatactttattgttaaatcttcagcattgactactttgttattaaacaaatggtaataatgagggaacattctaattggcag---------------------
|| ||||| ||||||||||| |||||||||| | | |||||| | ||||||||||| || || |||||||| || || || ||||| || |||||||| ||||||   |    | |  | ||| ||| |   | || |    | ||    ||||  |  || ||     | | | |  || ||||  ||     || ||  || ||                      
ACTGTTGCCAAGAGCATTGAGTTCAAGGATAGAATTAAGAACGTTGGTGCCAGTCTTGTGAAACAGGTTGCTAACGCCACAAATGACGTAGCTGGTGATGgtaagtgttccctttc--aatggattaaaacgttttttctgtttttgctaattgggttgttagtctcctatctactcatattaatc-ggtgtttttgtatctgacaaaatatatggtatgcgttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208170087|gb|GD966522.1|GD966522
EST:     AGCAGGTTGCCTTAATTGTCTACCAATGATGTGGCTGGTGACG                         GAACCACTTGTGCTACAATTCTCACTAAAGCAATATTTACGGAAGGGTGTA
genomic: AGCAGGTTGCC--AA-TG-CTACCAATGATGTGGCTGGTGACGgtaagccatt ... taattggcagGAACCACTTGTGCTACAATTCTCACTAAAGCAATATTTACGGAAGGGTGTA
EST: gi|192326928|gb|FK015155.1|FK015155
EST:     CAGTCTCGTAAAGCAGGTTGCCAATGCTACCAATGATGTGACTGGTGACG                         GAACCACTTTGTGCTACAATTACTCACTAAAGCAATATTTACGGAAGGGTG
genomic: CAGTCTCGTAAAGCAGGTTGCCAATGCTACCAATGATGTGGCTGGTGACGgtaagccatt ... taattggcagGAACCACTT-GTGCTACAATT-CTCACTAAAGCAATATTTACGGAAGGGTG
EST: gi|213593632|gb|DB971654.1|DB971654
EST:     CAGTCTCGTAAAGCAGGTTGCCAATGCTACCAATGATGTGGCTGGTGACG                         GAACCACTTGTGCTACAATTCTCACTAAAGCAATATTTACGGAAGGGTGTA
genomic: CAGTCTCGTAAAGCAGGTTGCCAATGCTACCAATGATGTGGCTGGTGACGgtaagccatt ... taattggcagGAACCACTTGTGCTACAATTCTCACTAAAGCAATATTTACGGAAGGGTGTA