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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATCTCACAAAAGATTTGCTAATGCATTTCCAAGATTTTGCAAACTTGTTGATGATGCCAGGCTCTATTGCACAAATGATGTCGGTGGTCCACCACAGgtaattcgaacatctttgcacactcttgtgaagaaatgattaatttcacactttactagctagtattaatttaaatgtcaaaaaggtaacaagcttgtaacacattacag

Basic information

species Glycine max
transcript GLYMA10G32900.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32900.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G04280.1 (Arabidopsis thaliana), 5'ss of exon 8
GAAATCTCACAAAAGATTTGCTAATGCATTTCCAAGATTTTGCAAACTTGTTGATGATGCCAGGCTCTATTGCACAAATGATGTCGGTGGTCCACCACAGgtaattcgaacatctttgcacactcttgtgaagaaatgattaatttcacactttactagctagtattaatttaaatgtcaaaaaggtaacaagcttgtaacacattacag
||| || ||||| ||||||||||||||||| ||||  | |||  | ||||||||| | || ||||| |||||||| |||| ||| |||||||| |||  ||||| |    ||    |  | |           ||   ||||   |  |  |||         || | || |   |||        |||   | | ||    ||      
GAATTCACACAAGAGATTTGCTAATGCATTCCCAAAGTATTGTGAGCTTGTTGATAACGCTAGGCTTTATTGCACCAATGCTGTTGGTGGTCCTCCAAGGgtaaattagtcaaaagtcaatatc--------aaatctattacgatgtcgtttttgggagagatactgatgtgtgtgttt------taattggttggtggagcag-----

upper sequence: GLYMA10G32900.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g04850.t01 (Vitis vinifera), 5'ss of exon 8
GAAATCTCACAAAAGATTTGCTAATGCATTTCCAAGATTTTGCAAACTTGTTGATGATGCCAGGCTCTATTGCACAAATGATGTCGGTGGTCCACCACAGgtaattcgaac--atctt-tgcacactcttgtgaagaaatgattaatttcacactttactagctagtattaat--ttaaatgtcaaaaaggtaacaa--gcttgtaaca--catt-acag-------------------------
|||||| ||||| |||||||| | ||| ||||  ||||  ||| ||||||||||| ||||||||||||||||||| ||||   | || || |||||    |||||        ||||| |||  |   || |     ||||   |||   | ||| ||||    | |  | ||  |    ||  | | |          | |||||||   |||| ||                           
GAAATCCCACAAGAGATTTGCAAGTGCGTTTCAGAGATACTGCCAACTTGTTGATAATGCCAGGCTCTATTGCACCAATGCCATGGGCGGCCCACCCAGCgtaataatgcttaatcttgtgcctagctttttagtttaatgtggaat---agactctactgctgaatgcttatactcttttgctacatactcctttgttgtttgtaactgtcatttactaactttattagtacaaattaatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5677029|gb|AI938159.1|AI938159
EST:     TTGATGATGCCAGGCTCTATTGCACAAATGATGTCGGTGGTCCACCACAG                         CTCAAATGGCGGAAG-ATGGTGATCAGAATCAGAATCTGCCTGATCCCAAA
genomic: TTGATGATGCCAGGCTCTATTGCACAAATGATGTCGGTGGTCCACCACAGgtaattcgaa ... cacattacagCTCAAATGGCGGAAGGATGGTGATCAGAATCAGAATCTGCCTGATCCCAAA