1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTATGGTTTCGCCTACTCTGGGCCCTTTGGACATTTTCTCCACAAATTGATGGATAAAATATTTAAGGGGGAGAAAGGCAATGACACTGTTGCTAAGAAGgtactgtaagcttttgatgttgttgtctgttggtctgtcctctggctctttcacttatagggagagtattttgtattgtgttctgtaatttccttggctctggtacaagtttctaactaatgctctcatgaatgaaatatcctgttattag
species | Glycine max |
transcript | GLYMA10G32690.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATGACACTGTTGCTTAAGAAG GTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTGTTTCAEST: gi|6725195|gb|AW309594.1|AW309594
genomic: AATGACACTGTTGC-TAAGAAGgtactgtaag ... ctgttattagGTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTG-TTCA
EST: TGGATAAAATATTTAAGGGGGAGAAAGGCAATGACACTGTTGCTAAGAAG GTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTGTTCATGEST: gi|193420460|gb|FK390467.1|FK390467
genomic: TGGATAAAATATTTAAGGGGGAGAAAGGCAATGACACTGTTGCTAAGAAGgtactgtaag ... ctgttattagGTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTGTTCATG
EST: AATGACACTGTTGCTAAGAAG GTGATTCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTGTTTCAEST: gi|298178523|gb|HO024258.1|HO024258
genomic: AATGACACTGTTGCTAAGAAGgtactgtaag ... ctgttattagGTGA-TCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTG-TTCA
EST: TGGATAAAATATTTAAGGGGGAGAAAGGCAATGACACTGTTGCTAAGAAG GTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTGTTCATGEST: gi|192308868|gb|FK002092.1|FK002092
genomic: TGGATAAAATATTTAAGGGGGAGAAAGGCAATGACACTGTTGCTAAGAAGgtactgtaag ... ctgttattagGTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTGTTCATG
EST: TGGATAAAATATTTAAGGGGGAGAAAGGCAATGACACTGTTGCTAAGAAG GTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTGTTCATGEST: gi|192308867|gb|FK002091.1|FK002091
genomic: TGGATAAAATATTTAAGGGGGAGAAAGGCAATGACACTGTTGCTAAGAAGgtactgtaag ... ctgttattagGTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTGTTCATG
EST: TGGATAAAATATTTAAGGGGGAGAAAGGCAATGACACTGTTGCTAAGAAG GTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTGTTCATGEST: gi|151408707|gb|EV278515.1|EV278515
genomic: TGGATAAAATATTTAAGGGGGAGAAAGGCAATGACACTGTTGCTAAGAAGgtactgtaag ... ctgttattagGTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTGTTCATG
EST: TGGATAAAATATTTAAGGGGGAGAAAGGCAATGACACTGTTGCTAAGAAG GTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTGTTCATGEST: gi|192317018|gb|FK010921.1|FK010921
genomic: TGGATAAAATATTTAAGGGGGAGAAAGGCAATGACACTGTTGCTAAGAAGgtactgtaag ... ctgttattagGTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTGTTCATG
EST: TGGATAAAATATTTAAGGGGGAGAAAGGCAATGACACTGTTGCTAAGAAG GTGGTCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTGTTCATGEST: gi|7285244|gb|AW597731.1|AW597731
genomic: TGGATAAAATATTTAAGGGGGAGAAAGGCAATGACACTGTTGCTAAGAAGgtactgtaag ... ctgttattagGTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTGTTCATG
EST: TGGATAAAATATTTAAGGGGGAGAAAGGCAATGACACTGTTGCTAAGAAG GTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTNTGTTCATG
genomic: TGGATAAAATATTTAAGGGGGAGAAAGGCAATGACACTGTTGCTAAGAAGgtactgtaag ... ctgttattagGTGATCCTTGAACAGATAACCAGTTCCCCATGGAACAACTTTTTGTTCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATGGTTTCGCCTACTCTGGGCCCTTTGGACATTTTCTCCACAAATTGATGGATAAAATATTTAAGGGGGAGAAAGGCAATGACACTGTTGCTAAGAAGgtactgtaagcttttgatgttgttgtctgttggtctgtcctctggctctttcacttatagggagagtattttgtattgtgttctgtaatttccttggctctggtacaagtttctaactaatgctctcatgaatgaaatatcctgttattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG