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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCAAATCAATTACTAAGGAAGTTTGCAAGCTGCCATCTTTTTTTTCCACTTCCCTTTTCCAAAAGATTGACAATGGAACTGGTGTTGTGACAAGgtgtgtaatttatttttctggaacttgttaacttttttgtgtcatggatggtgattcttgtttgagctgttgggcatttcaaagttttaggtctaggtgc...

Basic information

species Glycine max
transcript GLYMA10G30930.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G28850.1 (Arabidopsis thaliana), 5'ss of exon 4
AATTCAAATCAATTACTAAGGAAGTTTGCAAGCTGCCATCTTTTTTTTCCACTTCCCTTTTCCAAAAGATTGA---CAATGGAACTGGTGTTGTGACAAGgtgtgtaatttatttttctggaacttgttaacttttttgtgtcatggatggtgattcttgtttgagctgttggg-catttcaaagtttta-ggtctaggtgc--------------
||||||| | | | || |  ||| | |||||||| |||||||| || ||||||||||||||||  ||||| ||   |||    || ||| |||| || ||||||||    |  |  |      ||| ||   || | || ||  |   |  | ||   ||  |    |  ||   ||   |  ||| | |  || | |  |               
AATTCAAGTTAGTCACCAGAGAAATCTGCAAGCTCCCATCTTTCTTCTCCACTTCCCTTTTCCGGAAGATCGATCTCAACAATACAGGTTTTGTTACTAGgtgtgtg--ctgctgcttctatgcttttttttttgtatg-gtgcttcctcttcatgtctgcatagtttactgaaacaccacccagtataacagttttgtcgtgtttgtttctacag

upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G28900.1 (Arabidopsis thaliana), 5'ss of exon 4
AATTCAAATCAATTACTAAGGAAGTTTGCAAGCTGCCATCTTTTTTTTCCACTTCCCTTTTCCAAAAGATTGA---CAATGGAACTGGTGTTGTGACAAGgtgtgtaatttatttttctggaacttgttaacttttttgtgtca-tggatggtgattcttgtttgagctgttggg-catttcaaagttt--taggtctaggtgc------------
||||||| | | | || |  ||| | |||||||| |||||||| || ||||||||||||||||  ||||| ||   |||    || ||| |||| || ||||||||      || ||||     || ||   |||| | ||    |   |  | ||   ||  |    |  ||   ||   |  ||| |   || | |  |||             
AATTCAAGTTAGTCACCAGAGAAATCTGCAAGCTCCCATCTTTCTTCTCCACTTCCCTTTTCCGGAAGATCGATCTCAACAATACAGGTTTTGTTACTAGgtgtgtg-ccgcttcttctatgctttttttttttttgtatggtgcttcctcttcatgtctgcatagtttactgaaacaccacccagtataacagtttttcgtgtttgtttctacag