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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCgtacgctttctcttccttttcctgtttgcctaaaattcagtgtatcttcttggcatttgaagttttacttttatctatcttattgaagaaagttccagaggactaattttattacctgtttcaaatcaaaataggaaagtgaactgactttatttctttgaaaatatgaattag

Basic information

species Glycine max
transcript GLYMA10G30880.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11274705|gb|BF325040.1|BF325040
EST:     CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCC                         GTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGNTATTGTTGGT
genomic: CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCgtacgctttc ... tatgaattagGTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
EST: gi|254336691|gb|GR842870.1|GR842870
EST:     CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCC                         GTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
genomic: CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCgtacgctttc ... tatgaattagGTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
EST: gi|22523739|gb|BU082550.1|BU082550
EST:     CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCC                         GTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
genomic: CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCgtacgctttc ... tatgaattagGTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
EST: gi|151394304|gb|EV264175.1|EV264175
EST:     CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCC                         GTTTGCCTATCTAA
genomic: CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCgtacgctttc ... tatgaattagGTTTGCCTATCTAA
EST: gi|254320847|gb|GR827296.1|GR827296
EST:     CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCC                         GTTTGCCTATCTAA-GGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
genomic: CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCgtacgctttc ... tatgaattagGTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
EST: gi|21993634|gb|BQ785162.1|BQ785162
EST:     CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCC                         GTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
genomic: CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCgtacgctttc ... tatgaattagGTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
EST: gi|151394063|gb|EV263934.1|EV263934
EST:     CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCC                         GTTTGCCTATCTAAAG-TATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
genomic: CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCgtacgctttc ... tatgaattagGTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
EST: gi|15338184|gb|BI498848.1|BI498848
EST:     CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCC                         GTTTGCCTATCTAA
genomic: CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCgtacgctttc ... tatgaattagGTTTGCCTATCTAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCgtacgctttctcttccttttcctgtttgcctaaaattcagtgtatcttcttggcatttgaagttttacttttatctatcttattgaagaaagttccagaggactaattttattacctgtttcaaatcaaaataggaaagtgaactgactttatttctttgaaaatatgaattag

- - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - GCTGAT