1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTAAAGTAATCACTTCCACTGATAGATTTGAGATGTGGGGAGATGGATTGCAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAGgtatgtcttggctaattttgtggctcatagctgaattattgtgttctttctattgtttgtagttgtagtttaatattaagattctgaacttgcacttttc...
species | Glycine max |
transcript | GLYMA10G30400.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAACACGATCATTNNNNNTCATTGATGAGTGTGTTGNAGGTGTGCTTAG ATTGACTAAATCTGACTTCCGAGAGCCAGTAAATANTNNNAGCGATGAGATEST: gi|21594289|gb|BQ610114.1|BQ610114
genomic: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: GTTGAAGGTGTGCTTAG ATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATEST: gi|20813910|gb|BQ298388.1|BQ298388
genomic: GTTGAAGGTGTGCTTAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: CACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAG ATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATEST: gi|13311333|gb|BG404984.1|BG404984
genomic: CACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAG ATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATEST: gi|192294959|gb|FG986678.1|FG986678
genomic: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAG ATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATEST: gi|58018643|gb|CX705385.1|CX705385
genomic: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: GTTGAAGGTGTGCTTAG ATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATEST: gi|20813404|gb|BQ297882.1|BQ297882
genomic: GTTGAAGGTGTGCTTAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAG ATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAEST: gi|298176590|gb|HO023177.1|HO023177
genomic: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGA
EST: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAG ATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATEST: gi|8669973|gb|BE191080.1|BE191080
genomic: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAG ATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATEST: gi|4290524|gb|AI438086.1|AI438086
genomic: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAG ATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATEST: gi|120528817|gb|EH256951.1|EH256951
genomic: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: CATTGATGAGTGTGTTGAAGGTGTGCTTAG ATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATEST: gi|298191001|gb|HO038480.1|HO038480
genomic: CATTGATGAGTGTGTTGAAGGTGTGCTTAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCCTAG ATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATEST: gi|7587929|gb|AW703735.1|AW703735
genomic: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAG ATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATEST: gi|6502418|gb|AW203791.1|AW203791
genomic: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAG ATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATEST: gi|6846118|gb|AW348408.1|AW348408
genomic: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: CAAACACGATCATTTNNNNTCATTGATGAGTGTGTTGAAGGTGTGCTTAG ATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
genomic: CAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGACTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAAGTAATCACTTCCACTGATAGATTTGAGATGTGGGGAGATGGATTGCAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAGgtatgtcttggctaattttgtggctcatagctgaattattgtgttctttctattgtttgtagttgtagtttaatattaagattctgaacttgcacttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG