Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaattgtgtattgttgactattgtttacagcttatataattttttatatactaatagcctctggcatttgttatttttgcag

Basic information

species Glycine max
transcript GLYMA10G30200.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30200.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g52490.1 (Oryza sativa), 5'ss of exon 4
AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaattgtgtattg-----ttgactattgtt--tacagcttatataattttttatatactaatagcctctggcatttgttatttttgcag
||||| |||| |||||| || ||||||||  | ||||||||||| ||  | ||||| |||||||||||||| || || || |||||||| |  | ||||  || ||      || |  || ||  | ||| ||||||   ||  | | || || ||          || | | || ||||||
AATGGTCTTGCTACCAAGGTTGAGAAATCTCGCAAGCAAATGAAAGAACGCAAGAACAGAGCTAAGAAGATCCGTGGTGTCAAGAAGgtga-gctattggttactggagtcctgccatttcttgatgcaggttatattggttgctttgtaatactaatgggca-tgttgggttttattgcag

upper sequence: GLYMA10G30200.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G28060.1 (Arabidopsis thaliana), 5'ss of exon 4
AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaattgtgtattgttgactattgtttacagcttatataattttttatatactaatagcctct----ggcatttg--ttatttttgcag-----
||||||||||| |||||  | |||||||||||||| || || |||||||| ||||| || || |||||||| || || ||||||||||||| | |       | |    |  |   | ||||  |  |||  || | | | | |   |    |||    |  |||||  || ||||   ||     
AATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagagaccaacactaaccagaa--atctacatttgctattgttatgtttgtgcctgttttgtcttaacgatatttgcattgttttgtgagtgtag

upper sequence: GLYMA10G30200.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0151g00900.t01 (Vitis vinifera), 5'ss of exon 4
AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaattgtgtattgttgactattgtttacagcttatataattttttatatactaatagcctctggcatttgttatttttgcag------------------------------------------------------------------------------------------------
|||||| | |||||||| || || || |||||||||||||||||||| || ||||| || || |||||| | || ||||| ||||||||||   |||  | |    || |   |||||       | |  | | |   | ||| ||  || |  |   ||||  | ||||||| |                                                                                                
AATGGATTGGATACCAAGGTGGAAAAGTCAAGGAAGCAAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAGgtaaagaaatcatcttccttttaaccttgttgg-----tgtgcactctagca-atagtaccaggcctttcaatttcct-tttttgctgtacactgggttactattgccattcccattagccatattatttgccttcaaagatttgggaccttcacgttcattgtactactcgttactcttgcag

upper sequence: GLYMA10G30200.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 4
AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaattgtgtattgttgactat-tgtttacagcttatataattttttatatactaatagcctctggcatttgttatttttgcag
|||||| | |||||||| || ||||| || |||||||||||||||||||| ||||||||  | |||||| | || || || |||||||||| |      |  |||        |   |||    || || ||| |  || |   ||       ||   ||||| ||  |    |||
AATGGATTGGATACCAAGGTCGAGAAGTCTAGGAAGCAAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtgaataaatttgcagtggtacctttttctctcatttaactcattctcacctccctatttcc--catttcttgcta--acag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19347217|gb|BM892097.1|BM892097
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|208309688|gb|GE107246.1|GE107246
EST:     AGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAGAAAAGAAATGAGTTTTCAAA
genomic: AGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|192319535|gb|FK009517.1|FK009517
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTGAGAAG                         ACCAAGGCATCTGGTGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|58025196|gb|CX711937.1|CX711937
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|298165673|gb|HO008644.1|HO008644
EST:     TAAGAAGATTCGTGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: TAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|209713547|gb|BW681537.1|BW681537
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|24135844|gb|BU926354.1|BU926354
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|254323029|gb|GR839942.1|GR839942
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|21675969|gb|BQ628320.1|BQ628320
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGG
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGG
EST: gi|192306132|gb|FG993694.1|FG993694
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGNNNNNNNGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|42722991|gb|CK768890.1|CK768890
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|193331869|gb|FK296353.1|FK296353
EST:     CTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: CTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|192319861|gb|FK013273.1|FK013273
EST:     AATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGG-AGGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAA
genomic: AATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAG-TTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAA
EST: gi|192300336|gb|FG991438.1|FG991438
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAAGGCGGGGAAAAAAGAAATGAGTTTTCA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAA-GGCGGG-AAAAAAGAAATGAGTTTTCA
EST: gi|11690358|gb|BF598034.1|BF598034
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAATGCATCTGATGCTGCAAAGCCGGGAAAAAAGAAATGAGTTT
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTT
EST: gi|7796121|gb|AW781518.1|AW781518
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGNGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAG
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAG
EST: gi|18693002|gb|BM521850.1|BM521850
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|15001054|gb|BI321868.1|BI321868
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|298185347|gb|HO030560.1|HO030560
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTT
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTT
EST: gi|58020774|gb|CX707516.1|CX707516
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|192327529|gb|FK018205.1|FK018205
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTCCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|192311719|gb|FK003580.1|FK003580
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTGAGAAG                         ACCAAGGCATCTGGTGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|38193084|gb|CF922290.1|CF922290
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|192295452|gb|FG987066.1|FG987066
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|21595184|gb|BQ610395.1|BQ610395
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGG
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGG
EST: gi|298163232|gb|HO011965.1|HO011965
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|254315836|gb|GR825645.1|GR825645
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATTTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|151396920|gb|EV266793.1|EV266793
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACTAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|7145698|gb|AW507620.1|AW507620
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|10843108|gb|BF066427.1|BF066427
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAG
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAG
EST: gi|192325499|gb|FK017225.1|FK017225
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|209713548|gb|BW681538.1|BW681538
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|298197015|gb|HO041782.1|HO041782
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|298194597|gb|HO043069.1|HO043069
EST:     AAACGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|192298217|gb|FG992052.1|FG992052
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|298187696|gb|HO031653.1|HO031653
EST:     AAATGAAGGAGGGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|13181016|gb|BG352356.1|BG352356
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTTGCAA-GGCGGGAAAAAAGAAATGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCT-GCAAAGGCGGGAAAAAAGAAATGA
EST: gi|298183529|gb|HO028742.1|HO028742
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|298177182|gb|HO027077.1|HO027077
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|192311720|gb|FK003581.1|FK003581
EST:     AATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGGAGTTGAGAAG                         ACCAAGGCATCTGGTGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGG-AGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|298198844|gb|HO042207.1|HO042207
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGNNNNNNNGAAATGAGTTTTCAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAA-GAAATGAGTTTTCAA
EST: gi|192313094|gb|FK004684.1|FK004684
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|298173365|gb|HO016701.1|HO016701
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|192319534|gb|FK009516.1|FK009516
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTGAGAAG                         ACCAAGGCATCTGGTGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|6718631|gb|AW306278.1|AW306278
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCCTGCAA-GGCGGGAAAAAAGAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGC-TGCAAAGGCGGGAAAAAAGAAA
EST: gi|192306133|gb|FG993695.1|FG993695
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATTTGATGCTGCAAAGGCGGNNNNNNNGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|151393246|gb|EV263121.1|EV263121
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|254315835|gb|GR825644.1|GR825644
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|8285385|gb|BE022944.1|BE022944
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCG
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCG
EST: gi|254323030|gb|GR839943.1|GR839943
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|192305683|gb|FG998033.1|FG998033
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|298168639|gb|HO009569.1|HO009569
EST:     AAATGAAGGAGAGAAAGAATAGCGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|298181619|gb|HO025794.1|HO025794
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAGA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|192322531|gb|FK014652.1|FK014652
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|298165850|gb|HO008821.1|HO008821
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|192313093|gb|FK004683.1|FK004683
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAG                         ACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagACCAAGGCATCTGATGCTGCAAAGGCGGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|26058682|gb|CA801596.1|CA801596
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGGTAAGAAG                         AACCAAG-CATCTGATGCTGCAAAG
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaat ... atttttgcagA-CCAAGGCATCTGATGCTGCAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGGGGAGTTAAGAAGgtaatacaattgtgtattgttgactattgtttacagcttatataattttttatatactaatagcctctggcatttgttatttttgcag

- - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG