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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGTGCCATTTGCCTTTCAAAGAGTAGAAGGCATGCTTTTCAGAGAAACATTTGACGATGAAGTAGTTCACCTCAGGAACTCATTTTCAATGCTTGAGgtagccatcaagagcatcactttagatacattttttttacatgtttcttcattctattctccaatcaaaatcaaaattttatcaccataacctgtataac...

Basic information

species Glycine max
transcript GLYMA10G29300.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G29300.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G05470.1 (Arabidopsis thaliana), 5'ss of exon 3
CGATGTGCCATTTGCCTTTCAAAGAGTAGAAGGCATGCTTTTCAGAGAAACATTTGACGATGAAGTAGTTCACCTCAGGAACTCATTTTCAATGCTTGAGgtagccatcaagagcatcactttagatacatttttt--ttacatgtttcttcattctattctccaatcaaaatcaaaattttatcaccataacctgtataac
 |  || |||||||| ||||| ||||  ||||  |||||||  |||||||| ||||| |||||||| ||||| ||||| ||||| || || |||||||||||    || |      | |||||| || | ||| ||  || | ||   |||||   ||   |  | | | | | |||| |   | || |             
TGGAGTTCCATTTGCGTTTCAGAGAGCTGAAGCAATGCTTTATAGAGAAACGTTTGAAGATGAAGTGGTTCATCTCAGAAACTCCTTCTCCATGCTTGAGgt----attacagtgtttactttatattcgtttattgatttcttgca-cttcaagttacggtg-attaacacttaaaagtactttactag------------