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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAACTGAAAAAACTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTTATCTTCCCTACCCTTAAGTCATCAAGACTGCGAACTTTGATCAATCAAAGgtatgcatgattaatttcaactgactccatctatctattttgctatgctctttcattcacatggctgagctctgctttttgacccatatgccgctatggg...

Basic information

species Glycine max
transcript GLYMA10G29090.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G29090.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G316967_T01 (Zea mays), 5'ss of exon 4
TAGAACTGAAAAAACTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTTATCTTCCCTACCCTTAAGTCATCAAGACTGCGAACTTTGATCAATCAAAGgtatgcatgattaatttcaactgactccatctatctattttgctatgctctttcattcacatggctgagctctgctttttgacccatatgccgctatggg
| || || |||||||| || || ||||| || |||||||| || || ||| |||||||||| |||||| ||||| | || |||||| | ||||||||||||| || | |  |||| | |      | | |  |   || ||    | |  || || |    |   || |  ||| |||    |||| |||  ||      
TTGAGCTAAAAAAACTTATTGAAGCAAACCCCCTTTTCCGGGAAAAACTTGTCTTCCCTACTCTTAAGGCATCACGCCTCCGAACTCTAATCAATCAAAGgtttgaaag--taatctaatgctgttactttaacggatattctgtttccattccaatatttttagtgtga-ctgatttcccccccaaatgt-gcag----

upper sequence: GLYMA10G29090.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0060g01680.t01 (Vitis vinifera), 5'ss of exon 4
TAGAACTGAAAAAACTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTTATCTTCCCTACCCTTAAGTCATCAAGACTGCGAACTTTGATCAATCAAAGgtatgcatgattaatttcaactgac-tccatctatctattttgctatgctctttcattcacatggctgagctctgctttttgacccatatgccgctatggg---
|||| || |||||||| || || |||||||||||||||||||| |||||| | || ||||| || |||||||||||| |||||||| | |||||||||||||| |   |  ||||   |  |||  | ||      || | || ||    | || |  || |   ||| | |    | |   ||  || |  |   |       
TAGAGCTTAAAAAACTAATTGAAGCAAATCCTCTTTTCCGTGACAAGCTTGTTTTTCCTACTCTCAAGTCATCAAGATTGCGAACTCTAATCAATCAAAGgtaagttggtataatcatagatgatatgcaaaaggttagtctgtta----cattaaaccagaaaactgtgtttaattgtggcacttatgtttcaaaaacacccc