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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAGTTTGGAAGCTGGAAAAAAATGGTGGTAGCATTATTGGTGGAACTTTCAAAGCAATACAAGAGAGAAATGGAGCTTCAAAACCACCTCGAGATCCgtaataatatatttgctctggatttttgccataatttattgagtatttcactaattcaattaatcatgtag

Basic information

species Glycine max
transcript GLYMA10G27890.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312907|gb|FK004049.1|FK004049
EST:     TTCAAAGCAATACAAGAGAGAAATGGAGCTTCAAAACCACCTCGAGATCC                         GCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACT
genomic: TTCAAAGCAATACAAGAGAGAAATGGAGCTTCAAAACCACCTCGAGATCCgtaataatat ... aatcatgtagGCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACT
EST: gi|15338083|gb|BI498739.1|BI498739
EST:     TTCAAAGCAATACAAGAGAGAAATGGAGCTTCAAAACCACCTCGAGATCC                         GCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACT
genomic: TTCAAAGCAATACAAGAGAGAAATGGAGCTTCAAAACCACCTCGAGATCCgtaataatat ... aatcatgtagGCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACT
EST: gi|17022014|gb|BM093048.1|BM093048
EST:     TTCAAAGCAATACAAGAGAGAAATGGAGCTTCAAAACCACCTCGAGATCC                         GCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACT
genomic: TTCAAAGCAATACAAGAGAGAAATGGAGCTTCAAAACCACCTCGAGATCCgtaataatat ... aatcatgtagGCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAAGTTTGGAAGCTGGAAAAAAATGGTGGTAGCATTATTGGTGGAACTTTCAAAGCAATACAAGAGAGAAATGGAGCTTCAAAACCACCTCGAGATCCgtaataatatatttgctctggatttttgccataatttattgagtatttcactaattcaattaatcatgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC