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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTCACTTCAATCTTCAGTGAATGCAGTGCAAGACCATGCACCTGCTTCTCCTGATGAACCTGCTGGGGAGCCACAAAAGCACACTTATGCTTCCATTgtatgcactggctagcctctatgttaatttccaaatagtgttttcttttgggattctgttatgacattagaactgacaatgttatggattgttggaag

Basic information

species Glycine max
transcript GLYMA10G26640.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G26640.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0049g01940.t01 (Vitis vinifera), 5'ss of exon 4
TGGTTCACTTCAATCTTCAGTGAATGCAGTGCAAGACCATGCACCTGCTTCTCCTGATGAACCTGCTGGGGAGCCACAAAAGCACACTTATGCTTCCATTgtatgcactggctagcct--ctatgttaatttcca--aatagtgttttcttttgggattctgttatgacattagaactgacaatgttatggattgttggaag----------
|||||| |||||   |    ||||  |  | |||||||   | |||||| |   ||||||||||| ||| ||||| ||||| ||||||||||||||||||||||| | |   |    |   | | ||  ||  ||     |         |  | || ||  ||||   ||| ||| |||   | || |    ||   ||            
TGGTTCGCTTCAGAATGTGATGAACACTTTACAAGACCTCCCTCCTGCTCCCGTTGATGAACCTGTTGGAGAGCCTCAAAAACACACTTATGCTTCCATTgtatggattaattcttttagttctattggttcacatgggcacacacacactgagtgagtcatttatttaattggaagtgatttttttttt--ctgcctgattttatttatag