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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGTTGCAAAGAGCATTGAATTCAAGGATAAAGTTAAGAATGTTGGTGCCAGTCTTGTAAAGCAGGTTGCAAATGCTACTAATGATGTGGCTGGTGATGgtaagctgatatatccaaagaagattgtgcttaatagtcaacttttctctattagttactttgttacttgtacaatactagattgcatgtggttgttaaa...

Basic information

species Glycine max
transcript GLYMA10G25630.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G25630.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 4
ACTGTTGCAAAGAGCATTGAATTCAAGGATAAAGTTAAGAATGTTGGTGCCAGTCTTGTAAAGCAGGTTGCAAATGCTACTAATGATGTGGCTGGTGATGgtaagctgatatatccaaagaagattgtgcttaatagtcaacttttct-ctattagt-tactttgttacttgtacaatactagattgcatgtggttgttaaa-
|||||||| ||||||||||| |||||||||| ||| |||||||||||||| || ||||||||||||||||| ||||| || ||||||   ||||| ||||||| |  | | ||     |  |   |||    |||| |      ||||  ||  | | |||    ||  || || | || || |        |    |   | 
ACTGTTGCCAAGAGCATTGAGTTCAAGGATAGAGTCAAGAATGTTGGTGCAAGCCTTGTAAAGCAGGTTGCTAATGCGACCAATGATACTGCTGGAGATGgtatg--gctgtacttgtaccattctgttgagaatacttggtccttctgttagcattctacaactttggttatatatta-taaacaattccagaccatctcat

upper sequence: GLYMA10G25630.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g04970.1 (Oryza sativa), 5'ss of exon 4
ACTGTTGCAAAGAGCATTGAATTCAAGGATAAAGTTAAGAATGTTGGTGCCAGTCTTGTAAAGCAGGTTGCAAATGCTACTAATGATGTGGCTGGTGATGgta-agctgatatatccaaagaagattgtgc-ttaatagtcaacttttctctattagttactttgttacttgtacaatactagattgcatgtggttgttaaa----
|||||||| ||||||||||||||||   | |  ||||||||||||||||| || ||||| ||||||||||| ||||| ||||| ||    ||||| |||||||  ||| |  | | |  | | | |  |   ||     ||||  ||  | | |    |  | | |||   ||   ||  | ||||| |  || |   |||     
ACTGTTGCCAAGAGCATTGAATTCAGTAACAGGGTTAAGAATGTTGGTGCAAGCCTTGTGAAGCAGGTTGCTAATGCGACTAACGACACTGCTGGGGATGgtatggcttaactcttctcatatgctcatatattgcccatcaatcttcttttctggact--tgtattag--gtttgatgatggattggaattgatc--taagtcac

upper sequence: GLYMA10G25630.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G416120_T01 (Zea mays), 5'ss of exon 3
ACTGTTGCAAAGAGCATTGAATTCAAGGATAAAGTTAAGAATGTTGGTGCCAGTCTTGTAAAGCAGGTTGCAAATGCTACTAATGATGTGGCTGGTGATGgtaagctgatatatccaaagaagattgtgcttaatagtcaac------ttttctctattagttact-ttgttacttgtacaatactagattgcatgtggttgttaaa
|||||||| |||||||||||||| ||||||| ||| |||||||||||||| || ||||| || |||||||| ||||| ||||||||    |||||||||||||   ||| ||       |  |||| || || || || |||      |  ||||| | |   | | ||      | |    |   |  || ||      |||||  
ACTGTTGCGAAGAGCATTGAATTTAAGGATAGAGTAAAGAATGTTGGTGCGAGCCTTGTGAAACAGGTTGCTAATGCAACTAATGACACTGCTGGTGATGgta---tgacatcctttgtgctgattttggtttattgtgaacaaagaatggtctctgtaaaagattattaaggagtttgtcttctgaacttccaaaca--tgtta--

upper sequence: GLYMA10G25630.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G458208_T01 (Zea mays), 5'ss of exon 3
ACTGTTGCAAAGAGCATTGAATTCAAGGATAAAGTTAAGAATGTTGGTGCCAGTCTTGTAAAGCAGGTTGCAAATGCTACTAATGATGTGGCTGGTGATGgtaagctgatatatccaaagaagattgtgcttaatagtcaact-tttctctattag-ttactttgttacttgtacaatactagattgcatgtggttgttaaa
||||| ||||||||||||||||| ||||||| ||| |||||||||||||| || ||||| || |||||||| ||||| ||||||||    ||||| ||||||| |   ||   |     |  | || |    || |   ||   ||||| ||  || ||  |      || ||    |          |  || || ||   
ACTGTAGCAAAGAGCATTGAATTTAAGGATAGAGTAAAGAATGTTGGTGCAAGCCTTGTGAAACAGGTTGCTAATGCAACTAATGACACTGCTGGCGATGgtatgac-atcctttgtgtgctggttattgcgaacaaagaatggtttctgtaaaagattgttacagagctagtcttctcaacttccatacatgtttcttgt-

upper sequence: GLYMA10G25630.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G23990.1 (Arabidopsis thaliana), 5'ss of exon 3
ACTGTTGCAAAGAGCATTGAATTCAAGGATAAAGTTAAGAATGTTGGTGCCAGTCTTGTAAAGCAGGTTGCAAATGCTACTAATGATGTGGCTGGTGATGgtaagctgatatatccaaagaagat-tgtgcttaatagtcaacttttctctattagttactttgttacttgtacaatactagattg-catgtggttgttaaa
|||||||| || || ||||| ||||| || ||| ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |  |  ||    |     | || | || |||||        || |   |   ||| ||| ||   | |     ||  ||| ||||  |        
ACTGTTGCCAAAAGTATTGAGTTCAAAGACAAAATTAAGAACGTTGGTGCTAGTCTTGTGAAGCAGGTTGCAAATGCTACTAATGATGTTGCTGGTGATGgtaagatatttcattttgattgattatgcggttcatagttgtagaaactttgcaaa--actatgt-accaatgcttgtttaacttgtcatgcag--------

upper sequence: GLYMA10G25630.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 4
ACTGTTGCAAAGAGCATTGAATTCAAGGATAAAGTTAAGAATGTTGGTGCCAGTCTTGTAAAGCAGGTTGCAAATGCTACTAATGATGTGGCTGGTGATGgtaagctgatatatccaa------agaagattgtgcttaatagtcaacttttctctattagttactttgttacttgtacaatactagattgcatgtggttgttaaa--------------------
|||||||| ||||||||||| |||||||||| | ||||||| ||||||||||||||||| || |||||||| || || || ||||| || |||||||||||||||        | |||      | ||  || |   |  |  |     ||    | |||||  | |   ||||  ||  | |   |  |   |||   ||  |||                    
ACTGTTGCCAAGAGCATTGAGTTCAAGGATAGAATTAAGAACGTTGGTGCCAGTCTTGTGAAACAGGTTGCTAACGCCACAAATGACGTAGCTGGTGATGgtaagtgttccctttcaatggattaaaacgttttttctgtttttgctaattgggttgttagtctcctatctactcatatta-atcggtgtttttgtatctgacaaaatatatggtatgcgttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326682|gb|FK018869.1|FK018869
EST:     CAGTCTTGTAAAGCAGGTTGCAAATGCTACTAACGATGTGGCTGGTGATG                         GAACCACGTGCGCTACAGTCCTTACACGAGCAATATTTACTGAAGGCTGCA
genomic: CAGTCTTGTAAAGCAGGTTGCAAATGCTACTAATGATGTGGCTGGTGATGgtaagctgat ... tgttttgcagGAACCACGTGCGCTACAGTCCTTACACGAGCAATATTTACTGAAGGCTGCA
EST: gi|16276997|gb|BI942150.1|BI942150
EST:     CAGTCTTGTAAAGCAGGTTGCAAATGCTACTAATGATGTGGCTGGTGATG                         GAACCACGTGCGCTACAGTCCTTACACGAGCAATATTTACTGAAGGCTGCA
genomic: CAGTCTTGTAAAGCAGGTTGCAAATGCTACTAATGATGTGGCTGGTGATGgtaagctgat ... tgttttgcagGAACCACGTGCGCTACAGTCCTTACACGAGCAATATTTACTGAAGGCTGCA