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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGGTGGAGTTGCATCTGGGTTTAAAAAACCTGAAGAAGAGGAGTTTGAAACACGTTTGTATGTATGCAGAGGGAAAAGAGTTGTAAGATTGAGACAGgtatagtcttctctgttattcatgaacttcattaattcagtacgcatgaagtttgacattttgctttgacag

Basic information

species Glycine max
transcript GLYMA10G21350.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G21350.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G047310_T02 (Zea mays), 5'ss of exon 5
AGAGGGTGGAGTTGCATCTGGGTTTAAAAAACCTGAAGAAGAGGAGTTTGAAACACGTTTGTATGTATGCAGAGGGAAAAGAGTTGTAAGATTGAGACAGgtata----gtcttctctgttatt-catgaacttcattaattcagt---acgcatgaagtttgacattttgctttgacag
 ||||||||  |||| |||||||| ||||| |||||||| ||  ||||||||||||| |||||| ||||||||||||| |||| | |  |  | | | |||||||     |   | |  ||| | ||     || |  | |||||    |    || |   || | | ||  ||      
GGAGGGTGGTTTTGCCTCTGGGTTCAAAAAGCCTGAAGAGGAAAAGTTTGAAACACGGTTGTATATATGCAGAGGGAAGAGAGCTATTCGGGTTAAAGAGgtatatgagattcacccccttactgcacattatttacaatttcagctcaataattggaccctgccttctttgttcag---

upper sequence: GLYMA10G21350.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G180988_T01 (Zea mays), 5'ss of exon 5
AGAGGGTGGAGTTGCATCTGGGTTTAAAAAACCTGAAGAAGAGGAGTTTGAAACACGTTTGTATGTATGCAGAGGGAAAAGAGTTGTAAGATTGAGACAGgtatagt-------cttctctgttattcatgaacttca---ttaattcagtacgcatgaagtttgacattttgctttgacag
 ||||||||  | || |||||||| ||||| |||||||| ||| ||||||||||||| |||||| | ||||||||||| |||| | |  |  | | | |||||| |        |  |  || |   ||| |  | ||   | |  ||| ||    || |   || | | ||  ||      
GGAGGGTGGTTTCGCCTCTGGGTTCAAAAAGCCTGAAGAGGAGAAGTTTGAAACACGGTTGTATATTTGCAGAGGGAAGAGAGCTATTCGGGTTAAAGAGgtatgggagacacacccccttgctgcacatcatttacaatttcagctcaataattgtggatgctgccttctttgttcag---

upper sequence: GLYMA10G21350.2 (Glycine max), 5'ss of exon 4
lower sequence: AT3G57410.1 (Arabidopsis thaliana), 5'ss of exon 6
AGAGGGTGGAGTTGCATCTGGGTTTAAAAAACCTGAAGAAGAGGAGTTTGAAACACGTTTGTATGTATGCAGAGGGAAAAGAGTTGTAAGATTGAGACAGgtatagtcttctctgttattcatgaacttcatta-attcagtacgcatgaa-gtttgacattt-tgctttgacag--------------
||||||||| ||||| ||||| ||||||||||| || || |||||||||||||| ||  |||||   |||| ||| ||| | | |||    ||||  ||||| |  ||||  |||    |  | |      ||| | ||  | |||||||  |||| | || | |    | |                 
AGAGGGTGGTGTTGCGTCTGGATTTAAAAAACCGGAGGAGGAGGAGTTTGAAACCCGGCTGTATACCTGCAAAGGAAAACGTGCTGTCCACTTGAAGCAGgttt--tctttgctgcagatttttagaagtgttacactctcttcgcatgagtgtttaatatgtatatacttatctcttttcttttgtag