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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTAATGGTCAACCGGATATCATGTGATAGCAACGCTAACAAGTCATTGATGCAGCAACTCACATCAGACACTATAATTGAGgtagtactctatttctatttcattttcttatgattctatatttgtgggattccagttaaaggtgccattggattgccatgtggaatccag

Basic information

species Glycine max
transcript GLYMA10G18400.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G18400.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g05380.t01 (Vitis vinifera), 5'ss of exon 4
CTCTAATGGTCAACCGGATATCATGTGATAGCAACGCTAACAAGTCATTGATGCAGCAACTCACATCAGACACTATAATTGAGgtagt-------actctatttctatttcatttt---cttatgattctatatttgtgggattccagttaaaggtgccattggattgccatgtggaatccag
||   ||||| ||    |||||||| || |||||    | ||| || ||| ||||||||||||| ||||||||| | |||||||||||       | |  |||| ||||| | ||    | ||| |||   ||  ||   |     | || |   ||   |   | ||  |  |||||  |||
CTTCTATGGTGAATAAAATATCATGCGACAGCAATCAGAGCAACTCGTTGGTGCAGCAACTCACTTCAGACACTGTCATTGAGgtagtggtggcaaattgatttgtattttaattgtggcatatcatttggtaaatggttgtaaatatttcagattgttttgctaatgttacctggaagtcag