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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGCTGCACTTCCTTTGTTAATGGCATATGCTGGACACACAACTATAGTTATACCAAAGCCACTTGTCCCACACATTGGGATTGAGGTTTTGGATCTTGgtaagctttttgtacctttatgtttttttttttgaacggccaaaattatattaaatatagaatagaagatacatagtaccagaggtactacaagaagcca...

Basic information

species Glycine max
transcript GLYMA10G16320.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G16320.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g05920.t01 (Vitis vinifera), 5'ss of exon 4
ATTGCTGCACTTCCTTTGTTAATGGCATATGCTGGACACACAACTATAGTTATACCAAAGCCACTTGTCCCACACATTGGGATTGAGGTTTTGGATCTTGgtaagctttttgtacctttatgtttttttttttgaacggccaaaattatatta-aatatagaatagaagatacatagtaccagaggtactacaagaagcca--
 ||||||| |||||  |||| ||||| |||||||| || || |||||| ||||||||||||| ||  ||||| || ||||| | || ||||||||||| |||||    ||| || || | |    || || ||  |  |  | || | ||||| ||| || |||      |     ||        ||||   |  |   |  
TTTGCTGCTCTTCCCCTGTTGATGGCTTATGCTGGCCATACCACTATAATTATACCAAAGCCTCTCATCCCATACGTTGGGCTAGAAGTTTTGGATCTAGgtaaatgatttctaactctct-caattattgttacatagaaataact-tattataatgta-aatgtggtgttttctgtctttccattactgttaacatggata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193690287|gb|FK631896.1|FK631896
EST:     TATACCAAAGCCACTTGTCCCACACATTGGGATTGAGGTTTTGGATCTTG                         GATGGATGTATAAACTATATATGGGGCTCTTGGCTGTTTTTTGCACAAATT
genomic: TATACCAAAGCCACTTGTCCCACACATTGGGATTGAGGTTTTGGATCTTGgtaagctttt ... tatggggcagGATGGATGTATAAACTATATATGGGGCTCTTGGCTGTTTTTTGCACAAATT
EST: gi|17518507|gb|BM187549.1|BM187549
EST:     TATACCAAAGCCACTTGTCCCACACATTGGGATTGAGGTTTTGGATCTTG                         GATGGATGTATAAACTATATATGGGGCTCTTGGCTGTTTTTTGCACAAATT
genomic: TATACCAAAGCCACTTGTCCCACACATTGGGATTGAGGTTTTGGATCTTGgtaagctttt ... tatggggcagGATGGATGTATAAACTATATATGGGGCTCTTGGCTGTTTTTTGCACAAATT