Sequence
atgc intronic sequence ATGC exonic sequenceATTCAAGCCTGAATGTGTTGCACCCAGAAGAAAACAAACCGGTTGCTCCTGTTGAACTCTGCCCCATCCTGAAGACACTGTATAAAATATTGATATCCAGgtaactaatttcttgcaaccattatttgcctcttgacatgacccttcaagcttattactttgaaaactaattaaaattgaaaagtgttatttgtaagaca...
Basic information
species | Glycine max |
transcript | GLYMA10G15900.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G15900.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G155348_T01 (Zea mays), 5'ss of exon 5
ATTCAAGCCTGAATGTGTTGCACCCAGAAGAAAACAAACCGGTTGCTCCTGTTGAACTCTGCCCCATCCTGAAGACACTGTATAAAATATTGATATCCAGgtaacta--atttcttgcaaccattatttgcctcttgacatgacccttcaagctta-----ttactttgaaaactaattaaaattgaaaagtg-ttatttgtaagaca-----------------------------------------------------------
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AACCCAGCTTAAGTGTGCAGCACCCAGAAGAAAACAAGCAGGTTGCTCCAGCTGAGCTATGCCCAATCCTGAAGAGGCTTTACAGAATACTGATAAAAAGgtttgtgctatgtatcatcactactctccatatttggagagtttacagtgtgcttgaggagtgagtgccgcagtgcagacgaagtgagaagtgaccacttctcactcattcattttattggtttcattttactctcctgattagatatagacctgacttatgtgcag
upper sequence: GLYMA10G15900.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 4
ATTCAAGCCTGAATGTGTTGCACCCAGAAGAAAACAAACCGGTTGCTCCTGTTGAACTCTGCCCCATCCTGAAGACACTGTATAAAATATTGATATCCAGgtaactaatttcttgcaaccattatttgcctcttgacatgaccctt--caagcttattactttgaaaactaattaaaattgaaaagtgttatttgtaagaca
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AGTCAAGCTTGAGCGTGTTGCATCCTGAAGAAAACAAGCATGTGGCTCCTGTTGAGCTCTGCCCCATCTTGAAGACACTATACAGAATTCTAATAACAAGgtatttcctggttttttattaaaattgagca---gcctcgatttttgacaaatccgatgccataatgtgtgtttggtgttgatattggatgttcag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6915469|gb|AW396999.1|AW396999EST: GTTGAACTCTGCCCCATCCTGAAGACACTGTATAAAATATTGATATCCAG GGAACAGTCATCAGAAGCTATTCTCCAAGCTCTTAGGGATGAAAATCTGAA
genomic: GTTGAACTCTGCCCCATCCTGAAGACACTGTATAAAATATTGATATCCAGgtaactaatt ... catttctcagGGAACAGTCATCAGAAGCTATTCTCCAAGCTCTTAGGGATGAAAATCTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCAAGCCTGAATGTGTTGCACCCAGAAGAAAACAAACCGGTTGCTCCTGTTGAACTCTGCCCCATCCTGAAGACACTGTATAAAATATTGATATCCAGgtaactaatttcttgcaaccattatttgcctcttgacatgacccttcaagcttattactttgaaaactaattaaaattgaaaagtgttatttgtaagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA