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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTATTATTTGCCTCAAAATGCTGGAGCCATAGCTCGGAAGTACATTCAAGATCCACAGTTGTTGTCTTTCATAGATGCAGAGgtagatagatgtaactatttgtttgattcagttagaagtttcaagaaattattaaggaaaatgtgtcctgatgaggaatcaattctagtggatctcatgt...

Basic information

species Glycine max
transcript GLYMA10G10990.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G10990.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 4
CCTATTATTTGCCTCAAAATGCTGGAGCCATAGCTCGGAAGTACATTCAAGATCCACAGTTGTTGTCTTTCATAGATGCAGAGgtagatagatgtaactatttgtt--tgattcagttagaagtttcaag--aaattattaaggaaaatgtgtcctgatgaggaatcaattctagtggatctcatgt
| ||||| ||||| ||||||||||| || |||||||||||||||||  | ||||| || || ||||||||||| |||||||||||    | |    | ||||| ||  | | |     |    |||  |   |||||  ||   | ||| |  | ||   |  |  |  |  || | |    ||   
CTTATTACTTGCCCCAAAATGCTGGGGCTATAGCTCGGAAGTACATAAAGGATCCTCAATTATTGTCTTTCATTGATGCAGAGgtgagaaaaaaacattattttttcttaacttgcacaatttttttcactcaaatttatatccagaatatagcatggatatca-cccttcatatttgcctgcag--

upper sequence: GLYMA10G10990.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0032g00800.t01 (Vitis vinifera), 5'ss of exon 4
CCTATTATTTGCCTCAAAATGCTGGAGCCATAGCTCGGAAGTACATTCAAGATCCACAGTTGTTGTCTTTCATAGATGCAGAGgtagatagatgtaactatttgtttgattcag-----------ttagaagtttcaagaaattattaaggaaaatg----tgtcctgatgaggaatcaattctagtggatctcatgt------
||||||||||||| ||||||||||||| |||||| || ||||||||  | ||||| ||| |||| |||||||||||||| |||||     |  || | |   |  |||||   |           ||   || ||    |  ||  || || | ||     |    | ||||| | |||||  ||    ||   ||||      
CCTATTATTTGCCCCAAAATGCTGGAGACATAGCCCGCAAGTACATAAAGGATCCCCAGCTGTTATCTTTCATAGATGCTGAGgtttgccgcagttatttcatagttgatgttgagtttttcttattgatagctttggaaccttcatatggcatatcccactactttcatgagca-tcaatgttaact-atggtatgtctgcag