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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTTCATCCgtaaggatacccaaaatctcatcttttttggaaattttgattttgtaatttgaaggttctttgtgttgaaatgacttgagtttggttttggttttttcag

Basic information

species Glycine max
transcript GLYMA10G10040.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G10040.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G35940.2 (Arabidopsis thaliana), 5'ss of exon 3
-TGGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTTCATCCgtaaggatacccaaaatctcatcttttttggaaattttgattttgtaatttgaaggttctttgtgttgaaatgacttgagtttggttttggttttttcag
 |    ||  | |   | |||||||||||||| ||  | ||  | |||||  || | || || ||||| |||||||||||||| |||||||||||||||||||||| | |||||  ||  ||    |     |  |||      || ||    ||    ||  || |  || |    |   |||   || |          
TTCAACATCCTTC-CAATAATGCTTGGAGACCTCAACGTGGTCTCCCAGAACGAGCCGTCTCAGTTCTCCGTGCTTGGCTCTTCGAACACTTTCTTCATCCgtaagta-acccactata-cacacatgcactacttttcatcactggaacacaaa----ctcagtctctaagttgtctttcttttaattag----------

upper sequence: GLYMA10G10040.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0105g00230.t01 (Vitis vinifera), 5'ss of exon 10
TGGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTTCATCCgtaaggatacccaaaatctcatcttttttggaaattttgattttgtaatttgaaggttctttgtgttgaaatgacttgagtttggttttggttttttcag
||||||||||||| || |||| |||||||||||||||||||||||| || ||||| ||||||||||| || |||||||||||||||||||| || || ||||||| |  |    ||| | || || |||      ||    ||   |         |||    || ||| || | ||  |||  ||||  |         
TGGGAATGATCCAACAGAATGTTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcac-ctttcaattttattttattt------ttccccttcaaagcccagtaattccagttgctgagat-attttggttgtgtttcag---------

upper sequence: GLYMA10G10040.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ35199 (Selaginella moellendorffii), 5'ss of exon 3
TGGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTTCATCCgtaaggatacccaaaatctcatcttttttggaaattttgattttgtaatttgaaggttctttgtgttgaaatgacttgagtttggttttggttttttcag
  |||||| | || ||  |||| ||| | || ||  | |||||||| ||||||||||| ||  |||| || || ||||| || ||||||||||| ||||||||||     ||      | | |||||| |   |   |           | | | ||  ||   ||     ||||  |   |   |||||   ||  |||
ACGGAATGCTGCAGCAGCATGCATGGCGCCCTCAACGGGGATTGCCGGAGAGATCGGTATCCATTCTACGAGCGTGGCTATTCGAACACTTTCTGCATCCgtaag----tcc-----ttgagctttttcgcgta---tagccacacgcatgggatgtctttgacgt--gcttgacacgttctctcttttg--cttcacag

upper sequence: GLYMA10G10040.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ24138 (Selaginella moellendorffii), 5'ss of exon 5
TGGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTTCATCCgtaaggatacccaaaatctcatcttttttggaaattttgattttgtaatttgaaggttctttgtgttgaaatgacttgagtttggttttggttttttcag
  |||||| | || ||  |||| ||| | || ||  | |||||||| ||||||||||| ||  |||| || || ||||| || ||||||||||| ||||||||||     ||      | | |||||| |   |   |           | | | ||  ||   ||     ||||  |   |   |||||   ||  |||
ACGGAATGCTGCAGCAGCATGCATGGCGCCCTCAACGGGGATTGCCGGAGAGATCGGTATCCATTCTACGAGCGTGGCTATTCGAACACTTTCTGCATCCgtaag----tcc-----ttgagctttttcgcgta---tagccacacgcatgggatgtctttgacgt--gcttgacacgttctcttttttg--cttcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098270|gb|HO760011.1|HO760011
EST:     AGATCGGTTTCTGTTCTGCGTACTTGGCTCTTTGAACACTTTCTTCATCC                         TTACCCCAAGGACTCAGACAAGCACATGCTTGCTAAACAAACAGGGCTTAC
genomic: AGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTTCATCCgtaaggatac ... gttttttcagTTACCCCAAGGACTCAGACAAGCACATGCTTGCTAAACAAACAGGGCTTAC