1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCATGAAGAATCAACGTCTAGGCGCAAGACTGATGATAATGTTCAGGATGGAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAGgcatgttcatgtcttgaaagatggttgtgtgtgtgtttttgcagacttgtaagtaatctgatggctttctacttttag
species | Glycine max |
transcript | GLYMA10G10000.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAG GTTCTTAGCAACACAATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGEST: gi|9987770|gb|BE661878.1|BE661878
genomic: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAGgcatgttcat ... ctacttttagGTTCTTAGCAACACAATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGG
EST: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAG GTTCTTAGCAACACAATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGEST: gi|15813808|gb|BI786083.1|BI786083
genomic: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAGgcatgttcat ... ctacttttagGTTCTTAGCAACACAATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGG
EST: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACGACCAGAGCAAAG GTTCTTAGCAACACCATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGEST: gi|14205367|gb|BG839045.1|BG839045
genomic: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAGgcatgttcat ... ctacttttagGTTCTTAGCAACACAATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGG
EST: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAG GTTCTTAGCAACACAATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGEST: gi|208277056|gb|GE077465.1|GE077465
genomic: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAGgcatgttcat ... ctacttttagGTTCTTAGCAACACAATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGG
EST: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACGACCAGAGCAAAG GTTCTTAGCAACACCATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGEST: gi|151397650|gb|EV267523.1|EV267523
genomic: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAGgcatgttcat ... ctacttttagGTTCTTAGCAACACAATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGG
EST: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAG GTTCTTAGCAACACAATTAAGCAAA-GAGGAAGGAGAAGGCGGGAAAATGGEST: gi|151408011|gb|EV277826.1|EV277826
genomic: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAGgcatgttcat ... ctacttttagGTTCTTAGCAACACAATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGG
EST: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACGACCAGAGCAAAG GTTCTTAGCAACACCATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGEST: gi|24205496|gb|BU964749.1|BU964749
genomic: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAGgcatgttcat ... ctacttttagGTTCTTAGCAACACAATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGG
EST: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACGACCAGAGCAAAG GTTCTTAGCAACACCATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGEST: gi|298177257|gb|HO023504.1|HO023504
genomic: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAGgcatgttcat ... ctacttttagGTTCTTAGCAACACAATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGG
EST: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAG GTTCTTAGCAACACAATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGEST: gi|14206051|gb|BG839729.1|BG839729
genomic: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAGgcatgttcat ... ctacttttagGTTCTTAGCAACACAATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGG
EST: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAG GTTCTTAGCAACACAATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGG
genomic: GAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAGgcatgttcat ... ctacttttagGTTCTTAGCAACACAATTAAGCAAAAGAGGAAGGAGAAGGCGGGAAAATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGAAGAATCAACGTCTAGGCGCAAGACTGATGATAATGTTCAGGATGGAGCTGTTCCTGCTTATCTCCTTGATCGTGATAACACAACCAGAGCAAAGgcatgttcatgtcttgaaagatggttgtgtgtgtgtttttgcagacttgtaagtaatctgatggctttctacttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG