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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTATTGCTAGACGCTGTAATTACCTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAGgtgatctctttaactcattgctttatcatgttgatataaacttatgaatatttgttatttttgtaaaagaaaacaatgtcaaacatttgtattttactcatttttgcag

Basic information

species Glycine max
transcript GLYMA10G07580.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07580.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G52940.1 (Arabidopsis thaliana), 5'ss of exon 12
GGGTATTGCTAGACGCTGTAATTACCTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAGgtgatctctttaactcattgctttatcatgttgatataaacttatg-aatatttgttatttttgtaaaagaaaacaatgtcaaac-atttgtattttactcatt--tttgcag-------------------------------------------------------------------------------
||| ||||| || | |||||||||||| || || |||||||||||||| ||||| || || |||||||| ||||||| |  ||||   ||        | | |     |   ||| | ||| |  |  |  ||    | | |||     | | ||  |      ||  ||  |   |||  | |  |                                                                                
GGGAATTGCAAGGCACTGTAATTACCTTGGCGACTTGATGCTTGCTCTGTCCTTCAGTTTGCCATGTGGAATAAGgtaacttcttctgcttgagttcatcttacagctaccaaaagtcatgtagaaactaataccaatatcaaaacgttcgaagttgatttggctgacttaaagatattgatctctaaccatcatttgaaaagtctaaagctttcaagttcatttcccaaagctgtttttatgatattttgtcttgtgtattctcag

upper sequence: GLYMA10G07580.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g03930.t01 (Vitis vinifera), 5'ss of exon 12
GGGTATTGCTAGACGCTGTAATTACCTAGGGGATTTGATGCTTGCTCTCTCCTTTAGCTTACCATGTGGGATAAGgtgatctctttaactcattgctttatcatgttgatataaacttatgaatatttgttatttttgtaaaagaaaacaatgtcaaacatttgtattttactcatttttgcag
||| || || || | |||||||||||| ||||| ||| || | || || |||||||| ||||| ||||||||||||| ||  ||  || ||||      |   |||||| ||    |||   |||||    |||||  |          |||||       |  | |||| ||  |||||||||
GGGAATCGCAAGGCACTGTAATTACCTTGGGGACTTGTTGTTGGCACTGTCCTTTAGTTTACCTTGTGGGATAAGgtaattcct--aaatcat------actgtgttgacatgg--ttac--atattcacaattttcattttg------aatgtt-----ctcttttttttctactttttgcag