1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTTGGCTATTAAAGATTTCTGGCAAGTAGATGACAGAACAGTTGTTTTTGTTGCTGATCCCACATTTGgtaagtgaaccatcacacttttctttgttacttttgttcttcctttgtgttttttttggcttctttaatatatgaagtggttctgagcag
species | Glycine max |
transcript | GLYMA10G06430.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGGCAAGTAGATGACAGAACAGTTGTTTTTGTTGCTGATCCCACATTTG GCAATATATTGAATTTEST: gi|298187545|gb|HO034694.1|HO034694
genomic: CTGGCAAGTAGATGACAGAACAGTTGTTTTTGTTGCTGATCCCACATTTGgtaagtgaac ... ttctgagcagGCAATATATTGAATTT
EST: CTGGCAAGTAGATGACAGAACAGTTGTTTT-GTTGCTGATCCCACATTTG GCAATATATTGAATTTCAATGTTGGTGCTACGGTTGATTTGGATGTCCCACEST: gi|208063698|gb|GD862846.1|GD862846
genomic: CTGGCAAGTAGATGACAGAACAGTTGTTTTTGTTGCTGATCCCACATTTGgtaagtgaac ... ttctgagcagGCAATATATTGAATTTCAATGTTGGTGCTACGGTTGATTTGGATGTCCCAC
EST: CTGGCAAGTAGATGACAGAACAGTTGTTTTTGTTGCTGATCCCACATTTG GCAATATATTGAATTTCAATGTTGGTGCTACGGTTGATTTGGATGTCCCACEST: gi|151402284|gb|EV272097.1|EV272097
genomic: CTGGCAAGTAGATGACAGAACAGTTGTTTTTGTTGCTGATCCCACATTTGgtaagtgaac ... ttctgagcagGCAATATATTGAATTTCAATGTTGGTGCTACGGTTGATTTGGATGTCCCAC
EST: CTGGCAAGTAGATGACAGAACAGTTGTTTTTGTTGCTGATCCCACATTTG GCAATATATTGAATTTCAATGTTGGTGCTACGGTTGATTTGGATGTCCCAC
genomic: CTGGCAAGTAGATGACAGAACAGTTGTTTTTGTTGCTGATCCCACATTTGgtaagtgaac ... ttctgagcagGCAATATATTGAATTTCAATGTTGGTGCTACGGTTGATTTGGATGTCCCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGGCTATTAAAGATTTCTGGCAAGTAGATGACAGAACAGTTGTTTTTGTTGCTGATCCCACATTTGgtaagtgaaccatcacacttttctttgttacttttgttcttcctttgtgttttttttggcttctttaatatatgaagtggttctgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT