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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTGCTTGGTGTCTCACAAATATTGCTGCAGGGAATCCAGAAGAAACAGAAGCTCTGTTGCCTGCATTGCCCTTGCTTATTGCTCATCTTGGGGGTGAgtgatcactttaagattcttttgcatgtaaagaaatgaattagttttttatttttctctgtatataataaagataaagataaagattaagaggaattcttatagtctaaattcttaaagcattataagatatatattatgtaaaag

Basic information

species Glycine max
transcript GLYMA10G05740.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05740.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G03070.1 (Arabidopsis thaliana), 5'ss of exon 4
----AGGCTGCTTGGTGTCTCACAAATATTGCTGCAGGGAATCCAGAAGAAACAGAAGCTCTGTTGCCTGCATTGCCCTTGCTTATTGCTCATCTTGGGGGTGAgtgatcactttaagattcttttgcatgtaaagaaatgaattagttttttatttttctctgtatataataaagataaagataaagattaagaggaattcttatagtctaaattcttaaagcattataagatatatattatgtaaaag
    || | ||||||||||| || || |||||||| || || || ||||||||| ||||||| || ||||||||||| || || |||||||| ||||| |||      |   | ||     |       | |   |  || | |   || ||| | ||    |  || | |||    |  |  |  | ||| ||                                                        
CTTGAGTCAGCTTGGTGTCTTACCAACATTGCTGCTGGAAAACCTGAAGAAACAAAAGCTCTATTACCTGCATTGCCGTTACTCATTGCTCACCTTGGAGgt------ttgttgtactggccaaccaagtct---gttattactctattgtttttgttggattagatttcatatgattccaagtttatattcag--------------------------------------------------------

upper sequence: GLYMA10G05740.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0040g02290.t01 (Vitis vinifera), 5'ss of exon 4
----AGGCTGCTTGGTGTCTCACAAATATTGCTGCAGGGAATCCAGAAGAAACAGAAGCTCTGTTGCCTGCATTGCCCTTGCTTATTGCTCATCTTGGGGGTGAgtgatcactttaagattcttttgcatgtaaagaaatgaattagttttttatttttctctgtatataataaagataaagataaagattaagaggaattcttatagtctaaattcttaaagcattataagatatatattatgtaaaag
    |||| |||||||| || ||||||||||| || || || |||||||||||| ||||| || |||||||||| ||  |||||||||||||| | || |||  || ||   ||    |||    |         || |||||| | ||| |  || ||||     || ||  || ||   ||| ||  ||  |||        |  ||||||                                     
CTTGAGGCAGCTTGGTGCCTTACAAATATTGCAGCTGGAAAACCAGAAGAAACAAAAGCTTTGGTGCCTGCATTACCACTGCTTATTGCTCATTTGGGAGgtttgtaatggtttcggcatttcccttt------tgatatgaatgattttctctttcttct-----tacaagtaaaattttgatcaaccttttgag----ctgaaaggtctaaga-----------------------------------