1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AACTCAGATTCGTTCTAGGAGGCTCAGGATGTTAGAGGAGAATCAAGCACTACAAAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATGCGGgtctgtgtttcattttccttgatatattttcaaatgttaatctattgacatgaaagttttagcgtatgaattttgggatgcttttaaattatttcaaattctcataacag
species | Glycine max |
transcript | GLYMA10G05720.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGAGCATGCGG CTTGGGGAGGAATGGGATGACAGCGTACAATCAAAAGAACAAGTTGAAGCCEST: gi|207720112|gb|GD702611.1|GD702611
genomic: AGAGCATGCGGgtctgtgttt ... ctcataacagCTTGGGGAGGAATGGGATGACAGCGTACAATCAAAAGAACAAGTTGAAGCC
EST: TACAAAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATGCGG CTTGGGGAGGAATGGGATGACAGTGTACAATCAAAAGAACAAGTTGAAGCCEST: gi|193548623|gb|FK509536.1|FK509536
genomic: TACAAAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATGCGGgtctgtgttt ... ctcataacagCTTGGGGAGGAATGGGATGACAGCGTACAATCAAAAGAACAAGTTGAAGCC
EST: TACAAAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATGCGG CTTGGGGAGGGAATGGGATGACAGCGTACAATCAAAAGAACAAGTTGAAGCEST: gi|193691616|gb|FK629733.1|FK629733
genomic: TACAAAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATGCGGgtctgtgttt ... ctcataacagCTTGGGGAGG-AATGGGATGACAGCGTACAATCAAAAGAACAAGTTGAAGC
EST: TACAAAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATGCGG CTTGGGGAGGAATGGGATG-CAGCGTACAATCAAAAGAACAAGTTGAAGCCEST: gi|208265095|gb|GE065423.1|GE065423
genomic: TACAAAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATGCGGgtctgtgttt ... ctcataacagCTTGGGGAGGAATGGGATGACAGCGTACAATCAAAAGAACAAGTTGAAGCC
EST: TACAAAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATGCGG CTTGGGGAGGAATGGGATGACAGCGTACAATCAAAAGAACAAGTTGAAGCC
genomic: TACAAAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATGCGGgtctgtgttt ... ctcataacagCTTGGGGAGGAATGGGATGACAGCGTACAATCAAAAGAACAAGTTGAAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTCAGATTCGTTCTAGGAGGCTCAGGATGTTAGAGGAGAATCAAGCACTACAAAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATGCGGgtctgtgtttcattttccttgatatattttcaaatgttaatctattgacatgaaagttttagcgtatgaattttgggatgcttttaaattatttcaaattctcataacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA