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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTCAGCTGATGGCTCATTCTCTTTAAAGACCAACAAAGGTACAGTGGATGGTTTCTCTCATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattattttcaattatattgttttacttttctgtagttatctgtttgaaatattataaatctgtgttgacaatgaaaatttttagcttagaaaatgatt...

Basic information

species Glycine max
transcript GLYMA10G03740.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G03740.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0141g00390.t01 (Vitis vinifera), 5'ss of exon 4
AAAGTCAGCTGATGGCTCATTCTCTTTAAAGACCAACAAAGGTACAGTGGATGGTTTCTCTCATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattattttcaattatattgttttacttttctgtagt-tatctgtttgaaatattataaatctgtgttgacaatgaaaatttttagcttagaaaatgatt---
 || ||||||||||| ||  | ||||||||||| |||||||| ||||| || |||||||| ||||| |||||||| ||||||||||| ||||||||  ||||    ||||  | | |  || || |||| | | | || || |  |||    | || |  || ||     |  |    ||| ||  |  |        |||   
CAAATCAGCTGATGGTTCTCTGTCTTTAAAGACTAACAAAGGAACAGTTGAAGGTTTCTCCCATATCATGTTTGCAACAGGACGCAGGCCTAATACAAAGgttgatttttgtacttttatggttgacttctatttggtatacccatttt--cttttgttgatttgc--caatcaaagcaatgttaggtgtgtgtttccattttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299302|gb|FG988702.1|FG988702
EST:     ATGGTTTCTCTCATATTATGTTTGCTACAGGACGCAGACCTAATACTCAG                         AACTTAGGCCTGGAGTCTGTTGGTGTGAAAATAGCTAAAGATGGAGCTATA
genomic: ATGGTTTCTCTCATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattatttt ... tttactgcagAACTTAGGCCTGGAGTCTGTTGGTGTGAAAATAGCTAAAGATGGAGCTATA
EST: gi|6482472|gb|AW201729.1|AW201729
EST:     ATGGTTTCTCTCATATTATGNTTGCTACAGGACGCAGACCTAATACTCAG                         AACTTAGGCCTGGAGTCTGT
genomic: ATGGTTTCTCTCATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattatttt ... tttactgcagAACTTAGGCCTGGAGTCTGT
EST: gi|11273725|gb|BF324101.1|BF324101
EST:     ATGGTTTCTCTCATATTATGTTTGCTACAGGACGCAGACCTAATACTCAG                         AACTTAGGCCTGGAGTCTGTTGGTGTGAAAATAGCTAAAGATGGAGCTATA
genomic: ATGGTTTCTCTCATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattatttt ... tttactgcagAACTTAGGCCTGGAGTCTGTTGGTGTGAAAATAGCTAAAGATGGAGCTATA