Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGgttagtatcttaatttctcttacgtacttaaactttttctagtactttttacatcaaaaaggaaaccctacttattagccatgattccatgtataactaa...

Basic information

species Glycine max
transcript GLYMA10G03720.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283204|gb|BE020765.1|BE020765
EST:     ATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGG                         CACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAGACTAGTAGTAATT
genomic: ATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGgttagtatct ... tgtgcttcagCACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAGACTAGTAGTAATT
EST: gi|12772249|gb|BG237176.1|BG237176
EST:     ATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGG                         CACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAGACTAGTAGT
genomic: ATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGgttagtatct ... tgtgcttcagCACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAGACTAGTAGT
EST: gi|16345396|gb|BI970991.1|BI970991
EST:     ATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGG                         CACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAGACTAGTAGTAATT
genomic: ATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGgttagtatct ... tgtgcttcagCACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAGACTAGTAGTAATT
EST: gi|214005956|gb|DB986559.1|DB986559
EST:     ATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGG                         CACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAGACTAGTAGTAATT
genomic: ATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGgttagtatct ... tgtgcttcagCACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAGACTAGTAGTAATT
EST: gi|192319340|gb|FK009882.1|FK009882
EST:     ATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGT                         CACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAGACTAGTAGTAATT
genomic: ATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGgttagtatct ... tgtgcttcagCACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAGACTAGTAGTAATT
EST: gi|192319341|gb|FK009883.1|FK009883
EST:     ATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGTTATTGGACTGT                         CACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAGACTAGTAGTAATT
genomic: ATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGgttagtatct ... tgtgcttcagCACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAGACTAGTAGTAATT
EST: gi|16345395|gb|BI970990.1|BI970990
EST:     ATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGG                         CACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAGACTAGTAGTAATT
genomic: ATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGgttagtatct ... tgtgcttcagCACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAGACTAGTAGTAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGgttagtatcttaatttctcttacgtacttaaactttttctagtactttttacatcaaaaaggaaaccctacttattagccatgattccatgtataactaa

- - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaggaaa