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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgctggtgcttcagtcgttttatgtttttttctctttcagtgaataaggttcagaacttcttagtgaatgtggtaagctcttagtgatgcattcatttatccactgatctagctttacttcctgttgatttag

Basic information

species Glycine max
transcript GLYMA10G02380.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G038606_T03 (Zea mays), 5'ss of exon 3
----------------------GATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgct-ggtgcttcagtc-gttttatgtttttttctctttcagtgaataaggttcagaacttcttagtgaatgtggtaagctcttagtgatgcattcatttatccactgatctagctttacttcctgttgatttag
                      || || || |  |||||| | ||||| ||||| ||||||||||| || ||||| ||||| ||||| |||||||||||||| ||   | || |||   | || |      || | | ||||  |||   |   | |  ||  |  |||||   ||| |         || |  |||                                              
TTTATGATGGCTCGAATTGCAGGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatggatttcttggttaatgagcctagccaatctctatttcagttttgcttggttat-ttatgtgcttctccctgatttcttccttgtcattatgacatg------------------------------------------

upper sequence: GLYMA10G02380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G038606_T02 (Zea mays), 5'ss of exon 4
GATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgct-ggtgcttcagtc-gttttatgtttttttctctttcagtgaataaggttcagaacttcttagtgaatgtggtaagctcttagtgatgcattcatttatccactgatctagctttacttcctgttgatttag
|| || || |  |||||| | ||||| ||||| ||||||||||| || ||||| ||||| ||||| |||||||||||||| ||   | || |||   | || |      || | | ||||  |||   |   | |  ||  |  |||||   ||| |         || |  |||                                              
GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatggatttcttggttaatgagcctagccaatctctatttcagttttgcttggttat-ttatgtgcttctccctgatttcttccttgtcattatgacatg------------------------------------------

upper sequence: GLYMA10G02380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G095114_T01 (Zea mays), 5'ss of exon 4
GATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgct-ggtgcttcagtcgttttatgtttttttctctttcagtgaataaggttcagaacttcttagtgaatgtggtaagctcttagtgatgcattcatttatccactgatctagctttacttcctgttgatttag
||||| || |  |||||| | ||||| ||||| |||||||| || || ||||| ||||| ||||| |||||||||||||| ||   | || |||   | ||      ||   | | ||    ||  |       | ||  |  |||||  |    |    ||   | ||  |  | |||                                         
GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaatttcttggttaatgagggtagctacactctatttcagttttgcttggttgtttatgcgcttctaggcttctactttatttttttccttgt-cat-----------------------------------------

upper sequence: GLYMA10G02380.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g00230.t01 (Vitis vinifera), 5'ss of exon 6
GATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgctggtgcttcagtcgttttatgtttttttctctttcagtgaataaggttcagaacttcttagtgaatg--tggtaagctcttagtgatgcattcatttatccactgatctagctttacttcctgttgatttag
||||||||||| |||||| | ||||| ||||||||||| || || ||||| || || || ||||| |||||||||||||| |||    |||     |   || |   ||||||               |   |  |  |  || |   |||| ||   || || | |||| |        | | || ||   || ||    |||                 
GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAGgtatgt----ctgaaatct---tcctcacatgttt--------------aagctaaatctatgaccttacagtgcattcttgttacgttctttg-------cttagttgtcttttggtcctattttgt---------------

upper sequence: GLYMA10G02380.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ10085 (Selaginella moellendorffii), 5'ss of exon 3
GATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgctggtgcttcagtcgttttatgtttttttctctttcagtgaataaggttcagaacttcttagtgaatgtggtaagctcttagtgatgcattcatttatccactgatctagctttacttcctgttgatttag
||||||||  | |||||| | |||||||||||||||||  | ||||| ||||| ||||| ||||| ||||| || |||||| | | |        | || |||  |||          | |||  | |    || | |  |    ||| ||   ||    |                                                          
GATGGAGACCGGTTTTGGAGAATGCCCGAGTGCTACATCAGGGGCAACACCATCAAGTATCTTCGTGTTCCAGACGAGgtgagcgat-------ttccattcgcgttactgccgagcttgtttgtgagggagagatcctcactcacttcgt--ttgaaccag---------------------------------------------------------