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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAGgtaaagtttcaactgttccatatgagtgatgttgttcagtttagttggatgagacataatcattactcaaattcttttgatgaataattattatggtag

Basic information

species Glycine max
transcript GLYMA10G02130.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02130.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G02290.1 (Arabidopsis thaliana), 5'ss of exon 3
GTCTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAGgtaaagtttcaactg----ttccatatgagtgatgttgttcagtttagttggatgagacataatcattactcaaattcttttgatgaataattattatggtag
|| ||    ||||| || || ||||| ||| | || ||    |  || |||||| |||| || || || |||||||||||||||||||||||||||||     || ||    || | | |   || |  || |||| ||  |||||  |     ||   | |    |  | | ||  |  || ||  || ||||||
GTTTTTGCATTTGCGGACAAATACAGAGGAACTTATAGTGCAGGATTAAAACCTGATGTTTGTCCATTTTATTGCTCTTACTCTGGTTATCAGgtaaataagtaaatgagtttttcctttacatg-taatgatcagatt--ttggaaaattgtgaaatttaaagagagatttgttattttatgatatttttggtag

upper sequence: GLYMA10G02130.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g00740.t01 (Vitis vinifera), 5'ss of exon 4
GTCTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAGgtaaagtttcaact---gttccatatgagtgatgttgttcagtttagttggatgagacataatcattactcaa--attcttttgatgaataattattatggtag---------------
|| || ||||||||||| | |||||| ||| | ||||||||||  ||||||   |||||||||||||||||||||||||| |||||||||||||||| | |    ||   |  || |     |   |   ||    | ||      | | |||    || | |  |  ||    ||||  | |  || |  ||||                 
GTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAGgtaaggctatggcttcagccccttgcatttaggggcatttctataagcatttaggggcatttctataaatggattatgaacttga-aagtttttttcttggtgttttacattattgaag