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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAGCAGCAGAGATTCTTGGCCATAAGCGCGGTGGGAAGTTCGTGCACCCAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACCgtaagcctcttgtaattatatatatttccaattttttttttgttgaattgtcttgctatctgtgtggtgcaattcctgataaactgtttcttatactttgtttacccactgttctggtcttgtttaaagtattgatttctttttaatctgtaattgtttacttctttccag

Basic information

species Glycine max
transcript GLYMA10G02040.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g21950.1 (Oryza sativa), 5'ss of exon 4
CCGAGCAGCAGAGATTCTTGGCCATAAGCGCGGTGGGAAGTTCGTGCACCCAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACCgtaagcctcttgtaattatatatatttccaattttttttttgttgaattgtcttgctatctgtgtggtgcaattcctgataaactgtttcttatactttgtttacccactgttctggtcttgtttaaagtattgatttctttttaatctgtaattgtttacttctttccag
  | || || ||||||||||| |||||||| || | |||||| || ||||| ||||| ||||| || ||||| ||||| || ||||||||||| || || |||||  |    || || |     ||  |  |  ||||  |||  | ||  |||  |     |||  ||   |   |     ||  ||||                                                                                 
TAGGGCCGCTGAGATTCTTGGACATAAGCGTGGCGAGAAGTTTGTACACCCTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTgtaagatttcactattttt-----ttggccgtcattttaatgtgcatttacctt--tgctgatgttatgatttatgttgctgacattttcag-------------------------------------------------------------------------------

upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G010823_T01 (Zea mays), 5'ss of exon 4
CCGAGCAGCAGAGATTCTTGGCCATAAGCGCGGTGGGAAGTTCGTGCACCCAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACCgtaagcctcttgtaattatatatatttc--caattttttttttgttgaattgtcttgctatctgtg-tggtgcaattcctgataaactgtttcttatactttgtttacccactgttctggtcttgtttaaagtattgatttctttttaatctgtaattgtttacttctttccag
  | ||| | ||||| ||||| || |||||||||| |||||| |||||||||||||||||||| ||||| || || ||||| ||||||||||| || || ||||||||    ||| ||| | ||||||   | |  | ||  || || |     ||  |||   ||    ||   || |                                                                                               
TAGGGCATCTGAGATCCTTGGACACAAGCGCGGTGAGAAGTTTGTGCACCCAAATGACCATGTGAATAGGTCACAATCTTCAAATGATACATTTCCCACTgtaagcct----taactatttttatttcagtattactattactgctgcagatgtttattattcatggcattgacgtttccag--------------------------------------------------------------------------------------------

upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G348729_T01 (Zea mays), 5'ss of exon 7
CCGAGCAGCAGAGATTCTTGGCCATAAGCGCGGTGGGAAGTTCGTGCACCCAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACCgtaagcctcttgtaattatatatatttccaattttttttttgttgaattgtcttgctatctgtgtggtgcaattcctgataaactgtttcttatactttgtttacccactgttctggtcttgtttaaagtattgatttctttttaatctgtaattgtttacttctttccag
  | ||| | ||||| ||||| || ||| |||||  |||||| |||||||||||||||||||| ||||| || || ||||| ||||||||||| || || |||||| |    ||| ||| | |||||| | | ||  | ||  |  | |||                                                                                                                        
TAGGGCATCTGAGATCCTTGGACACAAGGGCGGTCAGAAGTTTGTGCACCCAAATGACCATGTGAATAGGTCACAATCTTCAAATGATACATTTCCCACTgtaagctt----taactatttttatttc-actattactattact--actgtag----------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G50950.3 (Arabidopsis thaliana), 5'ss of exon 3
CCGAGCAGCAGAGATTCTTGGCCATAAGCGCGGTGGGAAGTTCGTGCACCCAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACCgtaagcctc---ttgtaattatatatatttccaattttttttttgttgaattgtcttgctatctgtgtggtgcaattcctg-ataaactgtttcttatactttgtttacccactgttctggtcttgtttaaagtattgatttctttttaatctgtaattgtttacttctttccag
  ||||||| ||||||||||| || || || ||||  ||  | |||||||||||||||||||| || ||||| || ||||||||||| || || ||||| |||||| |    ||| | |   ||   |    |    |  |||||     ||  | | |  ||  |    | |  |    |  ||| |  || ||| || ||  | ||   |   |    |   |||   ||||| |  ||     |     | ||||  |||  || | |  ||
TAGAGCAGCTGAGATTCTTGGTCACAAACGTGGTGAAAAAATTGTGCACCCAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACTgtaagctttagtttgcattctcattagtcattaccaataattttgcatgcttaacgttcattcaattgcttacggtgttcgtgtaaccgattgcttttatttcctatatgtatgctcactgctctgtc--aagtactacttgacggtcg---tataat--tttggttttgtatag

upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G47510.2 (Arabidopsis thaliana), 5'ss of exon 5
CCGAGCAGCAGAGATTCTTGGCCATAAGCGCGGTGGGAAGTTCGTGCACCCAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACCgtaagcctcttgtaattatatatatttccaattttttttttgttgaattgtcttgctatctgtgtggtgcaattcctgataaactgtttcttatactttgtttacccactgttc-tggtcttgtttaaagtattgatttctttttaatctgtaattgtttacttctttccag
  ||||||| ||||||||||| |  || || |||| ||| |  |||||||||||||||||||| || ||||| || |||||||| || || || || ||||||||| |       | || |  ||| |   |     |  | || |  ||  ||    | |      |    || || |||   ||  ||   | | || |  ||      ||   |||||| |||    | |||  || | | ||                          
TAGAGCAGCTGAGATTCTTGGTCGCAAACGTGGTGAGAAATGTGTGCACCCAAATGACCATGTGAACAGATCACAATCTTCTAACGACACTTTTCCTACCgtaagctt-------tcatttgcattccagctaccaatactttttacatgctttaagtttttaaaatttttctttcttatatgttggctcacttccctt-tcaacttctaattgacggtcttttttttttttttggcttttgtctag-------------------------

upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 5
CCGAGCAGCAGAGATTCTTGGCCATAAGCGCGGTGGGAAGTTCGTGCACCCAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACCgtaagcctcttgtaattatatatatttccaattttttttttgttgaattgtcttgctatctgtgtggtgcaattcctgataaactgtttcttatactttgtttacccactgttctggtcttgtttaaagtattgatttctttttaatctgtaattgtttacttctttccag
  ||||||| ||||||||||||||| |||| ||||  || |  ||||| |||||||||||||| || ||||| || |||||||||||||||||||| || |||||||| ||| |   |   |||      |||||        | |  |  ||  |||  |   |||    |  | |   |     ||  | | |   || ||    ||||     || ||  || || | |   ||| || ||  ||                       
TAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAATATGTGCATCCAAATGACCATGTTAACAGATCACAATCTTCTAATGATACATTCCCTACTgtaagccttttgaa--caagaatagccatgatttt--------taagataactatctacttaaatggcttgacccatttca-----ttgttgaaatgatgattttttactg-----gtttttattgaattctatgtttgttgtttgtccag--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207685655|gb|GD667713.1|GD667713
EST:     CAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACC                         GTAATGCACATTGCAGCCACAATGGAAATAAACTCAAGACTAATTCCCAGC
genomic: CAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACCgtaagcctct ... ttctttccagGTAATGCACATTGCAGCCACAATGGAAATAAACTCAAGACTAATTCCCAGC