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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACCACGAGCATTTTCTTGCAATTACCCTAATCATGTTGCAGAACTATTGAAGGCTGTCAATGGGAACTTCCGTAGTCATCCTTGTCTCAATAAACAGgtaaagttctggttttcaaaaagttttgaagtagatgaagaaatttctttcatataaatctctgaagtagttttatttgtgaatttttactgcag

Basic information

species Glycine max
transcript GLYMA10G01770.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G01770.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G02660.1 (Arabidopsis thaliana), 5'ss of exon 4
AGTACCACGAGCATTTTCTTGCAATTACCCTAATCATGTTGCAGAACTATTGAAGGCTGTCAATGGGAACTTCCGTAGTCATCCTTGTCTCAATAAACAGgtaa---agttctggttttcaaaaagttttgaagtagatgaagaaatttctttcatataaatctctgaagtagttttatttgtgaatttttactgcag
 || ||  |||| |||||||| || || ||  | |||||||| || ||  | || ||||| ||||| ||||||||||| ||||||||||| || |||||||||    |  |    |     | || |    |  ||        ||||  | |  |         | | |   ||||  |||                
TGTTCCGAGAGCTTTTTCTTGTAACTATCCGTACCATGTTGCTGAGCTTCTCAAAGCTGTTAATGGAAACTTCCGTAGCCATCCTTGTCTTAACAAACAGgtactacaactaccatcccttataaatcgctagctatgctgcagaattcttgtggt---------taatgacattttccttgcag-------------

upper sequence: GLYMA10G01770.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g01240.t01 (Vitis vinifera), 5'ss of exon 5
AGTACCACGAGCATTTTCTTGCAATTACCCTAATCATGTTGCAGAACTATTGAAGGCTGTCAATGGGAACTTCCGTAGTCATCCTTGTCTCAATAAACAGgtaaagttctggttttcaaaaagttttgaagtagatgaagaaatttctttcatataaatctctgaagtagttttatt--tgtgaattttt--actgcag
 || || || ||||| ||||||||||| ||||  ||||| ||||| ||| | |||||||| |||||||| || || | |||||||||||| ||||| ||||||   |     ||     || |  ||   ||| |||  |    | |    |||| ||    | || |    ||     |||| ||||||  ||| |||
TGTGCCTCGGGCATTCTCTTGCAATTATCCTAGGCATGTAGCAGAGCTACTCAAGGCTGTTAATGGGAATTTTCGGAATCATCCTTGTCTGAATAACCAGgtactatctccattactctaaggactt---gtatatgggg----tccgaaaatatgaaaaattaaactgacattgccaatgtggatttttgtactacag