Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCAGTCGAGAAGTGACAGTGTCAACACTTCTCTATTTGACAAAAGGGAGCATATTGAGAAACTACATCGGACTTGTAATCTTCTTCGTAAAGTTCAGgtattaattattaaagcaatcatgcatgtttctttattccggctttgcatcactgaaatatttatgtttccatacttgacttagtggtatgacttctgagtcttttgtggaagtggaatatgactgacatactttttacctttgttgaaagtag

Basic information

species Glycine max
transcript GLYMA10G01660.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G01660.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G02030.1 (Arabidopsis thaliana), 5'ss of exon 4
TGTGCAGTCGAGAAGTGACAGTGTCAACACTTCTCTATTTGACAAAAGGGAGCATATTGAGAAACTACATCGGACTTGTAATCTTCTTCGTAAAGTTCAGgtattaattattaaagcaatcatgcatgtttctttattccggctttgcatcactgaaatatttatgtttccatacttgacttagtggtatgacttctgagtcttttgtggaagtggaatatgactgacatactttttacctttgttgaaagtag
 || || || |  |||||  | |||||||||||||| || || || || || ||||| |||||||| || |||||| |||||||||||||||||||||||||||    || | |  || |  |||  | || | ||| | |   |    ||||   |  |||   |     ||| |  | ||| |   ||      | | | || || | ||| | |                                     
AGTACAATCAAAGAGTGATGGGGTCAACACTTCTCTTTTCGAAAAGAGAGAACATATAGAGAAACTGCACCGGACTCGTAATCTTCTTCGTAAAGTTCAGgtat---gtaatgagtcatttttgctagcttatatat-ctgctgtgttgtcacctgatcattatagcaataata-tgaatttactcaaat------taatttttgtgagaaagagcag------------------------------------

upper sequence: GLYMA10G01660.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g01440.t01 (Vitis vinifera), 5'ss of exon 4
TGTGCAGTCGAGAAGTGACAGTGTCAACACTTCTCTATTTGACAAAAGGGAGCATATTGAGAAACTACATCGGACTTGTAATCTTCTTCGTAAAGTTCAGgtattaattattaa-agcaatcatgcatgtttctttattccggctttgcatcactgaaatatttatgtttccatacttgacttagtggtat-gacttctgagtcttttgtggaagtggaatatgactgacatactttttacctttgttgaaagtag
||| || || ||||||||  | || || || ||||| ||||| ||||| || ||||| |||||| | ||||| ||  | ||||||||||| ||||||||||||||||   |||  ||  |   || | || |   |||| |   | |     | ||| || ||| |     |||   ||||||   |  || ||    || |                                                      
TGTTCAATCTAGAAGTGATGGGGTTAATACCTCTCTTTTTGAGAAAAGAGAACATATAGAGAAATTGCATCGAACACGAAATCTTCTTCGGAAAGTTCAGgtattaaaatttactagtcaatgtgta-gtgttgctatttctcgtgtagtggaatgacatctttgtaagagcat---tgacttctagagattgatcaatgtgca----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9987596|gb|BE661704.1|BE661704
EST:     AGCATATTGAGAAACTACATCGGACTTGTAATCTTCTTCGTAAAGT-CAG                         TTCATATATGACCTACCCGATAGACTAAGCAAGTGCATCAAGTCGGAGGCC
genomic: AGCATATTGAGAAACTACATCGGACTTGTAATCTTCTTCGTAAAGTTCAGgtattaatta ... ttgaaagtagTTCATATATGACCTACCCGATAGACTAAGCAAGTGCATCAAGTCGGAGGCC