Sequence
atgc intronic sequence ATGC exonic sequenceCCAGAACTGGATGATTGTAAAAGGTGAAAAGATAGTGTTTCCTGGAGGAGGGACACATTTTCACAAAGGAGCTGACAAGTACATTGCATCAATTGCAAATgtaagaggcttactggttacctctataaagcataatgaaatgatatatgcattctgtttttcaattggtagcatcattggacttcatgtgtgttatgcag...
Basic information
species | Glycine max |
transcript | GLYMA10G00880.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G00880.2 (Glycine max), 5'ss of exon 4
lower sequence: AT3G23300.1 (Arabidopsis thaliana), 5'ss of exon 4
CCAGAACTGGATGATTGTAAAAGGTGAAAAGATAGTGTTTCCTGGAGGAGGGACACATTTTCACAAAGGAGCTGACAAGTACATTGCATCAATTGCAAATgtaagaggcttactggttacctctataaagcataatgaaatgatatatgcattctgtttttcaattggtagcatcattggacttcatgtgtgttatgcag
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CCAAAACTGGATGGTTGTTAAAGGAGAGAAAATCAATTTCCCTGGTGGAGGCACACATTTTCATTATGGTGCTGATAAGTATATTGCATCAATGGCAAATgtaaggcagttactagat---cttatgtggaata--gaggtg-tgtgtccatcttcattt---actgatactattcatggaaattgcag-----------
upper sequence: GLYMA10G00880.2 (Glycine max), 5'ss of exon 4
lower sequence: AT4G14360.1 (Arabidopsis thaliana), 5'ss of exon 4
CCAGAACTGGATGATTGTAAAAGGTGAAAAGATAGTGTTTCCTGGAGGAGGGACACATTTTCACAAAGGAGCTGACAAGTACATTGCATCAATTGCAAATgtaagaggcttactggttacctctataaagcataatgaaatgatatatgcattctgtttttcaattggtagcatcattggacttcatgtgtgttatgcag
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CCAAAACTGGATGGTTGTCAAAGGAGATAAGATTAATTTCCCTGGTGGAGGCACACATTTTCATTATGGTGCTGATAAGTATATTGCATCGATGGCAAATgtaaggaagttacacttggtgtttgtacaagagaacg------tatat-tattctttcatttg-ctaattgtattcttggaaatttttcag---------
upper sequence: GLYMA10G00880.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0049g01180.t01 (Vitis vinifera), 5'ss of exon 4
CCAGAACTGGATGATTGTAAAAGGTGAAAAGATAGTGTTTCCTGGAGGAGGGACACATTTTCACAAAGGAGCTGACAAGTACATTGCATCAATTGCAAATgtaagaggcttactggttacctctataaagcataatgaaatgatatatgcattctgtttttcaattggtagcatcattggacttcatgtgtgttatgcag-
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CCAGAATTGGATGGTTGTAAAAGGTGAAAAGATAGTATTTCCTGGGGGAGGCACACATTTTCATTATGGAGCTGATAAATATATTGCTTCACTTGCAAATgtaagattgatgccctgttacactattaaaaagaatgggaaaggaaacgcatttcctttatttgg-gattcctttcttgaattatttctgtgttcaatgttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207701332|gb|GD683319.1|GD683319EST: GGACACATTTTCACAAAGGAGCTGACAAGTACATTGCATCAATTGCAAAT ATGCTCAATTTTTCAAACAACAATCTTAATAATGAAGGAAGACTGCGGACG
genomic: GGACACATTTTCACAAAGGAGCTGACAAGTACATTGCATCAATTGCAAATgtaagaggct ... gtattgccagATGCTCAATTTTTCAAACAACAATCTTAATAATGAAGGAAGACTGCGGACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCAGAACTGGATGATTGTAAAAGGTGAAAAGATAGTGTTTCCTGGAGGAGGGACACATTTTCACAAAGGAGCTGACAAGTACATTGCATCAATTGCAAATgtaagaggcttactggttacctctataaagcataatgaaatgatatatgcattctgtttttcaattggtagcatcattggacttcatgtgtgttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA