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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCGGAAGGATATACTCACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGgtaagctcaaagctgtaaaaaataacgtcaaatgatggtaaattttgctatacttttatgacatggatcaatgatacttattgcggtcttcttctggatcaatacttaatttcaataatctgatttttaaatgcattccag

Basic information

species Glycine max
transcript GLYMA10G00830.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00830.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G23310.1 (Arabidopsis thaliana), 5'ss of exon 5
TGATGCGGAAGGATATACTCACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGgtaagctcaaagctgtaaaaaataacgtcaaatgatggtaaattttgctatacttttatgacatggatcaatgatacttattgcggtcttcttctggatcaatacttaatttcaataatctgatttttaaatgcattccag
| ||| |||| || | ||| || ||||||||||| || || ||||||||||| |||||| |||| || ||||| |||||||| || |||||||| || ||||    | ||      ||  |     || || |  | |   ||  |  |    ||||        || ||   ||     |  |    || ||   |                                            
TTATGAGGAAAGACACACTTACTGAAGATGAGGCAAGATTTTATGTTGGGGAAACTGTCTTAGCTATCGAGTCCATTCATAAGCACAATTATATCCACAGgtctagtgaagcaatcaactatctgagtaaatttgtagcgtatcatttttcttttttggtgttctgaccatccatttacttctccaatttgttacag--------------------------------------------

upper sequence: GLYMA10G00830.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G14350.3 (Arabidopsis thaliana), 5'ss of exon 5
TGATGCGGAAGGATATACTCACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGgtaagctcaaagctgtaaaaaataacgtcaaatgatggtaaattttgctatacttttatgacatggatcaatgatacttattgcggtcttcttctggatcaatacttaatttcaataatctgatttttaaatgcattccag
| ||| |||| || |  ||||| ||||| ||||||||||| ||| ||||||| |||||||| || || ||||| |||||||| || || || ||||| |||| ||    ||||   | || |||   |  | |  | |      ||| |||  | || | | | |  |   |  |    | || | |                                                      
TTATGAGGAAAGACACCCTCACTGAAGACGAGGCCAGGTTTTATATTGGGGAAACTGTCCTGGCTATTGAGTCCATTCATAAGCACAACTACATTCACAGgtcagt--gaagc---agaatatatgatttagttctagctcccattgttattttgttctaa-acgtctttttt-tctccaatgtgatacag--------------------------------------------------

upper sequence: GLYMA10G00830.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 4
TGATGCGGAAGGATATACTCACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGgtaagctcaaagctgtaaaaaataacgtcaaatgatggtaaattttgctatacttttatgacatggatcaatgatacttattgcggtcttcttctggatcaatacttaatttcaataatctgatttttaaatgcattccag
||||||| |||||||   | || |||||||||||||| || |||||||| || || ||||| || || ||||| || ||||| |||||||||||||||||||  |   ||   | |    |  |   |   ||| ||| ||   |    || ||| |    ||||  | ||  |        ||  |   | |||  ||   |||||| || ||                           
TGATGCGAAAGGATACTTTGACTGAAGATGAGGCCAGATTTTATGTTGGTGAAACCGTCCTTGCTATCGAGTCCATCCATAAGCATAATTATATTCATAGgtttgtgtaagatttt----atcatgattgtatg-tgggaaccatatgcatgcttctg-atcatgacttaagaa--------gcaataaccctctccatatttactta-ttacag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254348922|gb|GR852601.1|GR852601
EST:     GAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAG                         AGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGCCACATGAAATT
genomic: GAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGgtaagctcaa ... tgcattccagAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGCCACATGAAATT
EST: gi|31561374|gb|CD487212.1|CD487212
EST:     GAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAG                         AGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGCCACATGAAATT
genomic: GAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGgtaagctcaa ... tgcattccagAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGCCACATGAAATT