Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTCAGTGGTGAAATTGTACCAGAAGAAAATTTCTTGGGGATTTGTAGCAGAGAATTGCTAGCCAGAGGTTGTGAACTTCTCAAGCGCACTCGCACCGgtatacttcctgaaatttacatttctagcgtttctgaatcacaatatttgttacaatttgttttagttttgttctctgctaacataatttggcatggttt...

Basic information

species Glycine max
transcript GLYMA10G00600.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00600.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G14740.3 (Arabidopsis thaliana), 5'ss of exon 2
AGCTTCAGTGGTGAAATTGTACCAGAAGAAAATTTCTTGGGGATTTGTAGCAGAGAATTGCTAGCCAGAGGTTGTGAACTTCTCAAGCGCACTCGCACCGgtatacttcctgaaatttacatttctagcgtttctgaatcacaatatttgttacaatttgttttagttttgttctctgctaacataatttggcatggttt
||   |||||||||| |||||| | | || ||||||||||| | |||||| ||||||| ||| || |||||||||||||| ||||| ||||||||||  ||||         ||||| | | || | |  |||   | |   ||| || |||     |||  |   ||||||    || |     | ||| |||      
AGTCACAGTGGTGAACTTGTACAACAGGAGAATTTCTTGGGAACTTGTAGTAGAGAATGGCTCGCTAGAGGTTGTGAACTCCTCAAACGCACTCGCAAAGgtaaga-----aaaattcaaacttgt-gtatttaaaagtttaaattttagttg----ttgaatc--ttttgtctaatgatgtgtgacttttgcag-----