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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTAATTTTATGATTATTGCAATCTCAACTCAGCTTCTTTGTGGGCCATCTCCTGGACCGAATGATGTGAACCCATTTCTTGATGCAGCGATGGCTCAGgtaagaagttgaaacttaaacatcgaacttcggttatttagttgagctgtactccagcgagcaaatttcaagttagttcattgtaatcttttgcag

Basic information

species Glycine max
transcript GLYMA10G00550.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00550.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 4
GCTTAATTTTATGATTATTGCAATCTCAACTCAGCTTCTTTGTGGGCCATCTCCTGGACCGAATGATGTGAACCCATTTCTTGATGCAGCGATGGCTCAGgtaagaagttgaaacttaaacatcgaact---------tcggttatttagttga-gctgta-ctccag--cgagcaaa---tttcaagt--tagttcattgtaatcttt-tgcag
 ||||| || ||| | || |  || |||||||||||||||| |||||||||||| ||||| || ||||||||||||||  ||||||| || ||||||||||||| | |   ||  ||     ||   ||         ||  |   |  ||||  || | | ||||||  |   ||||   | ||| ||  ||  ||||||  ||  || |||||
ACTTAACTTCATGCTCATCGTGATGTCAACTCAGCTTCTTTCTGGGCCATCTCCAGGACCAAAAGATGTGAACCCATTCATTGATGCGGCAATGGCTCAGgtaacaggaacaatattctctctctctctctctctctctctctctctctgttggtgcaggatctccagatctttcaaaatttctcatgtcttaaatcattgatataattgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213603585|gb|DB962717.1|DB962717
EST:     CTCCTGGACCGAATGATGTGAACCCATTTCTTGATGCAGCGATGGCTCAG                         GATAGCCATCTGGTTACTTCAGTTGTGTGCAACCTGCTTCTAAATTACATT
genomic: CTCCTGGACCGAATGATGTGAACCCATTTCTTGATGCAGCGATGGCTCAGgtaagaagtt ... tcttttgcagGATAGCCATCTGGTTACTTCAGTTGTGTGCAACCTGCTTCTAAATTACATT
EST: gi|15337673|gb|BI498329.1|BI498329
EST:     CTCCTGGACCGAATGATGTGAACCCATTTCTTGATGCAGCGATGGCTCAG                         GATAGCCATCTGGTTACTTCAGTTGTGTGCAACCTGCTTCTAAATTACATT
genomic: CTCCTGGACCGAATGATGTGAACCCATTTCTTGATGCAGCGATGGCTCAGgtaagaagtt ... tcttttgcagGATAGCCATCTGGTTACTTCAGTTGTGTGCAACCTGCTTCTAAATTACATT