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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGCTCTTGGAGCAGCCAAAGGACTTGCCTTTCTCCACAATGCTGAAAGGCCTGTAATCTATCGCGACTTCAAAACCTCTAATATATTATTGGACTCCgtaagtttctgatattttgaagttaattaatctgtattgtattttatggctgttatgatggagttactattttttttcactgtgttcccaaatgactatag

Basic information

species Glycine max
transcript GLYMA09G40650.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40650.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G01020.1 (Arabidopsis thaliana), 5'ss of exon 3
GATTGCTCTTGGAGCAGCCAAAGGACTTGCCTTTCTCCACAATGCTGAAAGGCCTGTAATCTATCGCGACTTCAAAACCTCTAATATATTATTGGACTCCgtaagtttctgatattttgaagttaattaatctgtattgt------attttatggctgttatgatggagttactattttttttcactgtgttcccaaatgactatag
||||||||||||||| || ||||| ||||| || ||||||||||||||||| || || || ||| | || ||||| || || |||||| |  | |||||||||||    |  | ||||     |  ||   |    |||       || ||  |  |    |     |  || ||| |  ||  | || | |    ||   ||  ||
GATTGCTCTTGGAGCTGCGAAAGGCCTTGCTTTCCTCCACAATGCTGAAAGACCGGTTATTTATAGGGATTTCAAGACTTCCAATATACTGCTTGACTCCgtaagcagttattcttttctttctgctttgccaaagttgctccaagatattgggaatacctttccacaactaatatatccttg-attgggctgatgaac--cttcag

upper sequence: GLYMA09G40650.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0056g00150.t01 (Vitis vinifera), 5'ss of exon 4
GATTGCTCTTGGAGCAGCCAAAGGACTTGCCTTTCTCCACAATGCTGAAAGGCCTGTAATCTATCGCGACTTCAAAACCTCTAATATATTATTGGACTCCgtaagtttctgatattttgaagtta-attaatctgta---ttgtattttatggctgttatgatggagttact-attttttttcactgtgtt---cccaaatga--ctatag
||||||||| || || || ||||| ||||| || ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||  |  || | || ||   | ||||  |   |   || | | | || ||  | |||   || |   | | |  | || ||  || |   | |   |||  ||| ||
GATTGCTCTGGGTGCTGCGAAAGGGCTTGCTTTCCTCCATAATGCTGAAAGGCCTGTAATCTATCGGGACTTCAAAACGTCTAATATATTATTAGACTCTgtaagtagc--atttcttaaaaccacattagccaagacatttttttctcattgccatcatgggagaatgcttcactcctgtttaccctgctaatcaccggtgaatctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193434778|gb|FK403296.1|FK403296
EST:     GCCTGTAATCTATCGCGACTTCAAAACCTCTAATATATTATTGGACCTCC                         GACTATACAGCCAAACTTTCTGATTTTGGACTAGCTAA
genomic: GCCTGTAATCTATCGCGACTTCAAAACCTCTAATATATTATTGGAC-TCCgtaagtttct ... atgactatagGACTATACAGCCAAACTTTCTGATTTTGGACTAGCTAA
EST: gi|193686874|gb|FK629949.1|FK629949
EST:     GGCCTGTAATCTATCGCGACTTCAAAACCTCTAATATATTATTGGACTCC                         GACTATACAGCCAAACTTTCTGATTTTGGACTAGCTAAAGCAGGACCACAA
genomic: GGCCTGTAATCTATCGCGACTTCAAAACCTCTAATATATTATTGGACTCCgtaagtttct ... atgactatagGACTATACAGCCAAACTTTCTGATTTTGGACTAGCTAAAGCAGGACCACAA
EST: gi|208242922|gb|GE037440.1|GE037440
EST:     AATCTATCGCGACTTCAAAACCTCTAATATATTATTGGACTCC                         GACTATACAGCCAAACTTTCTGATTTTGGACTAGCTAAAGCAGGACCACAA
genomic: AATCTATCGCGACTTCAAAACCTCTAATATATTATTGGACTCCgtaagtttct ... atgactatagGACTATACAGCCAAACTTTCTGATTTTGGACTAGCTAAAGCAGGACCACAA
EST: gi|193321945|gb|FK285661.1|FK285661
EST:     GGCCTGTAATCTATCGCGACTTCAAAACCTCTAATATATTATTGGACTCC                         GACTATACAGCCAAACTTTCTGATTTTGGACTAGCTAAAGCAGGACCACAA
genomic: GGCCTGTAATCTATCGCGACTTCAAAACCTCTAATATATTATTGGACTCCgtaagtttct ... atgactatagGACTATACAGCCAAACTTTCTGATTTTGGACTAGCTAAAGCAGGACCACAA