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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATCTCATACATAGCAGAACGTGTGGTTGGCACTGGTTCTTTTGGTGTTGTTTATCAGgtattgatatttattttgcagtatttctttactcgtaggaattgatcctttgcttcactgttctatgggtttatctagttactttctttgcttatccacttcgctttgaatttactgtag

Basic information

species Glycine max
transcript GLYMA09G40150.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40150.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g37740.1 (Oryza sativa), 5'ss of exon 4
ACAATCTCATACATAGCAGAACGTGTGGTTGGCACTGGTTCTTTTGGTGTTGTTTATCAGgtattgatatttattttgcagtatttctttactcgtaggaattgatcctttgcttcactgttctatgggtttatctagttactttctttgcttatccacttcgctttga-atttactgtag
|   | |||||||| ||||||||||| ||||| |||||||| |||||||| |||| ||||||||      ||||||  ||       ||| |   |  | || | | ||   | ||    |  |     ||||     ||      |    ||||  ||      |||| |   || |   
AAGGTATCATACATGGCAGAACGTGTAGTTGGTACTGGTTCATTTGGTGTAGTTTTTCAGgtata-----ttatttcaca------ttttgccattctgtatcgctact---cctcgtcatgatggaaatttacaatatttgggcataaagttattgaccagttattgatacaaacag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297025|gb|FG990311.1|FG990311
EST:     ACATAGCAGAACGTGTGGTTGGCACTGGTTCTTTTGGTGTTGTTTATCAG                         GCTAAGTGCCTTGAAACTGGTGAAGCAGTTGCAATNNNNNNNGTGTTGCAA
genomic: ACATAGCAGAACGTGTGGTTGGCACTGGTTCTTTTGGTGTTGTTTATCAGgtattgatat ... tttactgtagGCTAAGTGCCTTGAAACTGGTGAAGCAGTTGCAATAAAAAAAGTGTTGCAA
EST: gi|13481439|gb|BG510782.1|BG510782
EST:     ACATAGCAGAACGTGTGGTTGGCACTGGTTCTTTTGGTGTTGTTTATCAG                         GCTAAGTGCCTTGAAACTGGT
genomic: ACATAGCAGAACGTGTGGTTGGCACTGGTTCTTTTGGTGTTGTTTATCAGgtattgatat ... tttactgtagGCTAAGTGCCTTGAAACTGGT
EST: gi|15814897|gb|BI787172.1|BI787172
EST:     ACATAGCAGAACGTGTGGTTGGCACTGGTTCTTTTGGTGTTGTTTATCAG                         GCTAAGTGCCTTGAAACTGGTGAAGCAGTTGCAATNNNNNNNGTGTTGCAA
genomic: ACATAGCAGAACGTGTGGTTGGCACTGGTTCTTTTGGTGTTGTTTATCAGgtattgatat ... tttactgtagGCTAAGTGCCTTGAAACTGGTGAAGCAGTTGCAATAAAAAAAGTGTTGCAA