1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAATCAGGAGATTTTATGACAATAGCTGGTTTCAATGCTGAGAATGAAATACTGCATACCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAGgtatgcttctgacatagtaatgctgaagttttattttttggaatatttttttcttttttattactttttgggttttggcagataatgatagtgctagctttttggtgcttctgataactgtgcatttgaattatcaatctaatatctacattttaataaactttattgtgcatgactacctattgtgcag
species | Glycine max |
transcript | GLYMA09G39150.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCCTTGCCTTCTTAGCAGGGCTGCTGATTTGGTCACAG ATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTEST: gi|15202361|gb|BI425361.1|BI425361
genomic: CCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAGgtatgcttct ... tattgtgcagATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGT
EST: AAATACTGCATACCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAG ATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTEST: gi|192302658|gb|FG994896.1|FG994896
genomic: AAATACTGCATACCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAGgtatgcttct ... tattgtgcagATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGT
EST: AAATACTGCATACCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAG ATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTEST: gi|193425164|gb|FK389893.1|FK389893
genomic: AAATACTGCATACCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAGgtatgcttct ... tattgtgcagATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGT
EST: AAATACTGCATACCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAG ATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTEST: gi|4396612|gb|AI495609.1|AI495609
genomic: AAATACTGCATACCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAGgtatgcttct ... tattgtgcagATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGT
EST: AAATACTGCATACCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAG ATAACAGATTTGCCCTTTTCTCTGTACTCAAEST: gi|209708354|gb|BW683944.1|BW683944
genomic: AAATACTGCATACCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAGgtatgcttct ... tattgtgcagATAACAGATTTGCCCTTTTCTCTGTACTCAA
EST: AAATACTGCATACCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAG ATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATEST: gi|207689928|gb|GD672433.1|GD672433
genomic: AAATACTGCATACCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAGgtatgcttct ... tattgtgcagATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGAT
EST: CCTTCTTAGCAGGGCTGATGATTTGGTCACAG ATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTEST: gi|213594940|gb|DB971799.1|DB971799
genomic: CCTTCTTAGCAGGGCTGATGATTTGGTCACAGgtatgcttct ... tattgtgcagATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGT
EST: AAATACTGCATACCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAG ATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTEST: gi|193346112|gb|FK310528.1|FK310528
genomic: AAATACTGCATACCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAGgtatgcttct ... tattgtgcagATAACAGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGT
EST: AAATACTGCATACCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAG ATAACAGATTT
genomic: AAATACTGCATACCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAGgtatgcttct ... tattgtgcagATAACAGATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATCAGGAGATTTTATGACAATAGCTGGTTTCAATGCTGAGAATGAAATACTGCATACCCTTGCCTTCTTAGCAGGGCTGATGATTTGGTCACAGgtatgcttctgacatagtaatgctgaagttttattttttggaatatttttttcttttttattactttttgggttttggcagataatgatagtgctagctttttggtgcttctgataactgtgcatttgaattatcaatctaatatctacattttaataaactttattgtgcatgactacctattgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT