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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGTGATAGCTTTTCACGGGGAATACATGGAAAATGGGAAACTCGATCTTCAGGACGATCTGATAAAGATAGTGATTCTCAATCTGAATTGGATTCAGgtttttacacttgatcagcaagaatatgcctgtccttaattctctacaaattaaactgtttggactgatatggcattcttccctatatctatgacttagtgatgggtattgaagtagaagtttctttgaaaagggttattttcatctatttcattgtttgtgtctatttgcag

Basic information

species Glycine max
transcript GLYMA09G39120.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39120.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0046g02270.t01 (Vitis vinifera), 5'ss of exon 3
AGAGGTGA-TAGCTTTTCACGGGGAATACATGGAAAATGGGAAACTCGATCTTCAGGACGATCTGATAAAGATAGTGATTCTCAATCTGAATTGGATTCAGgtttttacacttgatcagcaagaatatgcctgtccttaattctctacaaattaaactgtttggactgatatggcattcttccctatatctatgactta-gtgatgggtattgaagtagaagtttctttgaaaagggttattttcatctatttcattgtttgtgtctatttgcag
 ||    | ||  | ||| || ||||| |||||||  ||||||| ||| ||||| |||||   ||| ||||||||||| ||||||||||| | ||| |||||| |     ||| |    |   | |    |||| || | ||   || || |     | ||| |||  ||    |||| ||| ||  ||   ||    | ||| ||                                                                     
-GATTCAAGTAATTCTTCTCGAGGAATCCATGGAAGGTGGGAAAGTCGTTCTTCTGGACGGAGTGAGAAAGATAGTGACTCTCAATCTGATTGGGACTCAGgtatg---gcttaagtttctcaact---tctgttctaatttagatataagtgctgatattttgacatatgaatcatttttctcttcatgggtgctacaagtgttgt--------------------------------------------------------------------