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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaacatgggatgcatttttggttataatatatttgcattgttgtttctcatcatgggttgcatttttttgttgttgtgacggaatggtttgtg...

Basic information

species Glycine max
transcript GLYMA09G38640.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38640.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G151863_T01 (Zea mays), 5'ss of exon 4
ATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaacatgggatgcatttttggttataatatatttgcattgttgtttctcatcatgggttgcatttttttgttgttgtgacggaatggtttgtg
||||| |||||||| || || || || || || ||||| ||||| ||||| ||||||||||| ||||||||||| ||   ||| ||   | | |||||||| ||      |   | |   | | |   |  | |    |||| |    | | | ||        |  | ||  | ||   |||  |    | |  |   
ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACAgtgagctatttaattgctctttatctctattaattcctgttgcttatgcgctacacaatgcaaaatcaacttgatagtatctgttgcaagttagaattaa

upper sequence: GLYMA09G38640.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G151863_T04 (Zea mays), 5'ss of exon 3
-ATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaacatgggatgcatttttggttataatatatttgcattgttgtttctcatcatgggttgcatttttttgttgttgtgacggaatggtttgtg
 ||||| |||||||| || || || || || || ||||| ||||| ||||| ||||||||||| ||||||||||| ||   ||| ||   | | |||||||| ||      |   | |   | | |   |  | |    |||| |    | | | ||        |  | ||  | ||   |||  |    | |  |   
GATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACAgtgagctatttaattgctctttatctctattaattcctgttgcttatgcgctacacaatgcaaaatcaacttgatagtatctgttgcaagttagaattaa

upper sequence: GLYMA09G38640.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0023g00380.t01 (Vitis vinifera), 5'ss of exon 4
ATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaacatgggatgcatttttggttataatatatttgcattgttgtttctcatcatgggttgcatttttttgttgttgtgacggaatggtttgtg----
||||| ||||| || ||||||||||||||||| ||||| ||| | |||||||| |||||||| || |||||||||||||||||| ||||| ||||||| |||||      ||    | | | |||  ||   ||| |   ||  |    |||        || || | |   |||||| || ||| |      |    |    
ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCTAAATCAATTGTTTTATCTGGTGCGCTCAGTGCTTTGATTGTAATGACGgtaagctatctatt---ttcttgtttattttccatacaagagctgtacctttttgtgcttcggctttc-tccatttgttcttctgatgccccaatgcacgtgtg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18735262|gb|BM528663.1|BM528663
EST:     CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACA                         GTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
genomic: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
EST: gi|207777604|gb|GD747537.1|GD747537
EST:     CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACA                         GTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
genomic: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
EST: gi|192297697|gb|FG992775.1|FG992775
EST:     CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACA                         GTACTTTCTAC-----TTGGCAGGATTGTGCCTAATTTGATTTCTAGGA-G
genomic: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
EST: gi|26045883|gb|CA783315.1|CA783315
EST:     CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACA                         GTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
genomic: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
EST: gi|151405478|gb|EV275292.1|EV275292
EST:     CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACA                         GTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
genomic: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
EST: gi|208288397|gb|GE088750.1|GE088750
EST:     CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACA                         GTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
genomic: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG