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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCTTGTGCAGTTCTAGATGTTCTTGGTCCTCCATACTCTGATCCTGATGGCAGGCACTGCACATACTACCAGAATTTCCCTTTCTCCAACTATTCAGgtatcttcatatcctttgacaaatactgctaaattatgtcctttgattaccatttgtccaacttttctttagacaaatgataagtagtatcattaaccac...

Basic information

species Glycine max
transcript GLYMA09G37490.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G37490.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G39890.1 (Arabidopsis thaliana), 5'ss of exon 4
ACAGCTTGTGCAGTTCTAGATGTTCTTGGTCCTCCATACTCTGATCCTGATGGCAGGCACTGCACATACTACCAGAATTTCCCTTTCTCCAACTATTCAGgtat---cttcatatcctttg--acaaatactgctaaattatgtcctttgattaccatttgtccaacttttctttagacaaatgataagtagtatcattaaccac
|| ||||| || ||||| |||||| |||||||||||||||||||||| |  ||  | || || || |||||     |||  || ||||| |  |  || |||||    |||  | | |||   |  | |  || || | | |  |   |  |     | |       ||     || |||         |  |   | ||     
ACGGCTTGCGCGGTTCTTGATGTTATTGGTCCTCCATACTCTGATCCCGCAGGACGTCATTGTACTTACTATTTCGATTATCCGTTCTCTAGTTTCTCGGgtatagttttcgaaactttttctatgatttgtgttagaatctagctactagtagtactgtagtagggttgaacataaacaccgagctgattttcataata-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5770648|gb|AI973822.1|AI973822
EST:     TGGCAGGCACTGCACATACTACCAGAATTTCCCTTTCTCCAACTATTCAG                         ATGGACTATCCATACCAGAGGAGGAAAGAACAGCATATGAATGGCTTCAAG
genomic: TGGCAGGCACTGCACATACTACCAGAATTTCCCTTTCTCCAACTATTCAGgtatcttcat ... atttcagtagATGGACTATCCATACCAGAGGAGGAAAGAACAGCATATGAATGGCTTCAAG