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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgttcttcacctcccttttgttttgcttcatgacatacttttattcaatgaaaccttccgttcgttggagaaattgacaaccatgcttatgtta...

Basic information

species Glycine max
transcript GLYMA09G36870.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36870.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g16660.1 (Oryza sativa), 5'ss of exon 6
ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgttcttcacctcccttttgttttgcttca-tgacatacttttattcaatgaaaccttccgttcgttggagaaattgacaaccatgc-ttatgtta
||| | ||||| |||||||| ||||| |||||||| |||||||||||||| ||| |||| ||||| |||||||||   |||||       | ||||| |      | |  | ||   | | ||  ||| || | ||| |  |   |     |    | ||  |  |            |||  || 
ATTTTGCAAGAGGAAATTGGTGGTGTAAAAGGCCATTTTGGACCAATTAACGCACTGGCATTTAATCCTGATGGACGGAGgtaa------tattcttaatacatgtgtaatattatatgaatgctatatttatgttctaccaccgcacttatgttctcgattagctttttgtttcatattactttg

upper sequence: GLYMA09G36870.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os08g21660.2 (Oryza sativa), 5'ss of exon 6
ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTA-Tgttctctgttcttcacctcccttttgttttgcttcatgacatacttttattcaatgaaaccttccgttcgttggagaaattgacaacca-tgcttatgtta
||| | ||||| |||||||| ||||| |||||||| |||||||||||||| ||  |||| ||||| ||||||||    ||||| | ||||   | | |    |    |||   ||    |    ||    | |  |  || |    || |     || | |   ||      || || ||      
ATTTTGCAAGAGGAAATTGGTGGTGTTAAAGGCCATTTTGGACCAATTAACGCGCTGGCATTTAATCCTGATGGGCGGAGgtaatattcttaatacatgtatttgtatttacgttctgcccctgcacttatgttcttgattagctttttcccatatttgtgtgctttttgctcaatgatt------

upper sequence: GLYMA09G36870.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G143330_T01 (Zea mays), 5'ss of exon 6
ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgttcttcacctcccttttgttttgcttcatgacatacttttattcaatgaaaccttccgttcgttggagaaattgacaaccatgcttatgtta
||| | ||||| |||||||| ||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||||||    |||||  || | |  |||     |   | |   |||   ||||    |  |  |||| |  |    |  | | |  |||   | ||   |     |  || | |  
ATTTTGCAAGAGGAAATTGGTGGTGTTAAAGGGCATTTTGGGCCAATTAATGCTTTGGCATTTAATCCTGATGGGCGGAGgtaatttttttaatctgacagtggttgtctctttcagtcatagt-tggtagtattaacagttgac--caggttattgcccatatatgctgtttttattgtata-

upper sequence: GLYMA09G36870.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G028834_T03 (Zea mays), 5'ss of exon 6
ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTA-Tgttctctgttcttcacctcccttttgttttgct-tcatgaca--tacttttattcaatgaaaccttccgttcgttggagaaattgacaaccatgcttatgtta
||| | ||||| |||||||| ||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||||||    ||||| |  | | | || ||   ||    ||| |||||   |||| |    || ||| |||  || ||   ||     | |   |     | |     ||||        
ATTTTGCAAGAGGAAATTGGTGGTGTTAAAGGACATTTTGGGCCAATTAATGCTTTGGCATTTAATCCTGATGGGCGGAGgtaataattttttttatttgactgtggttttttttgtagtcattattgttagtttcattgtatcaacatttggccacttaacattgtctaaaggttatgc--------

upper sequence: GLYMA09G36870.2 (Glycine max), 5'ss of exon 4
lower sequence: AT2G46280.3 (Arabidopsis thaliana), 5'ss of exon 6
ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgttcttcacctcccttttgttttgct--tcatgacatacttttattc--aatgaaaccttccgttcgttggagaaattgacaaccatgcttatgtta-
||||| ||||| |||||||| ||||||||||| || |||||||| || ||||| ||||| || || |||||||| || |||||  ||  |     ||    |    ||  ||       || | ||||  |    ||   | ||     ||  | ||  |     | ||       |||  ||| | | 
ATTCTGCAAGAGGAAATTGGTGGTGTGAAAGGTCATTTTGGACCTATAAATGCTTTGGCATTCAATCCTGATGGGAAGAGgtaaattaacaacatttggattttgattgattgacacaatcctcacatgatgaggttttgagtgtgtgttttggctctctcactgagtttgtgga-atgtatatttcag

upper sequence: GLYMA09G36870.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g06630.t01 (Vitis vinifera), 5'ss of exon 7
ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgttctt----cacctcccttttgtttt-gcttcatgacatacttttattcaatgaaaccttccgttcgttggagaaattgacaaccatgcttatgtta
|||||||||||||||||||| ||||||||||| ||||||||||| || ||||| || || || |||||||||||||| |||||   | |||  | ||    ||  |   |  || ||  | ||| | | | |   ||  | |   ||| || |   |  |   |   |     || ||  ||       
ATTCTTCAAGAAGAAATTGGAGGTGTGAAAGGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAAGAGgtacactttcttctattatggcatgttattgctgattaagtttcttaaaaca---ttgatgagcaaaagctccacattttcaaatttaggttgaaacaccctc------

upper sequence: GLYMA09G36870.2 (Glycine max), 5'ss of exon 4
lower sequence: PP1S65_136V6.1 (Physcomitrella patens), 5'ss of exon 6
ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgt---tcttcacctcccttttgttttgcttcatgacatacttttattcaatgaaaccttccgttcgttggagaaattgacaaccatgcttat-gtta------------------
||| || | ||||| |||||||||||||| || ||||||||||| || |||||  |||||||||| || || || | |||||  | |   ||    |||      ||   | |  ||||  || | ||   || | ||   | |     |  || | ||||  ||||    |    | || || |||                   
ATTTTTGAGGAAGAGATTGGGGGTGTGAAGGGTCACTTTGGACCTATAAATGCCCTGGCTTTTAATCCGGACGGTAGAAGgtgcgcttcttgggggtctgtcagaccaactgggcttgc--cacgtcaaggttatgttttgtta-----tttgt-cattgggaaaataacaagttttactgattgttgaaacttgtggtttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208048194|gb|GD845333.1|GD845333
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG-T-T                         TTTA-CAAGTGGAGGTGAA
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAA
EST: gi|193306883|gb|FK269785.1|FK269785
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|193682833|gb|FK623861.1|FK623861
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|58016949|gb|CX703691.1|CX703691
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG-T-T                         TTT--CAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|193727164|gb|FK662856.1|FK662856
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G--T                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCAC-TCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|298193520|gb|HO034126.1|HO034126
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG-T-T                         TTT--CAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|193631237|gb|FK583698.1|FK583698
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|207749650|gb|GD721908.1|GD721908
EST:     ATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|193328386|gb|FK295961.1|FK295961
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|193527517|gb|FK484279.1|FK484279
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|208071470|gb|GD873015.1|GD873015
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|208172920|gb|GD969411.1|GD969411
EST:     CTTTGGACCAATTTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: CTTTGGACCAA-TTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|208120091|gb|GD918472.1|GD918472
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|193625891|gb|FK576675.1|FK576675
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|207760801|gb|GD734124.1|GD734124
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG-T-T                         TTT--CAAGTGGAGGTGA
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGA
EST: gi|193566289|gb|FK524092.1|FK524092
EST:     CTTTGGACCAATTAATGCATTGGCTTTTAACCCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: CTTTGGACCAATTAATGCATTGGCTTTTAA-CCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|207801785|gb|GD772539.1|GD772539
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|208231346|gb|GE028523.1|GE028523
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|193324290|gb|FK288832.1|FK288832
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG-T-T                         TTT--CAAGTGGAGGTGAAGATGGTTA
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTA
EST: gi|207715870|gb|GD699318.1|GD699318
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG-T-T                         TTT--CAAGTGGAGGTGAAGATGGTT
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTT
EST: gi|207809506|gb|GD781020.1|GD781020
EST:     TTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: TTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|193474692|gb|FK439331.1|FK439331
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|207763969|gb|GD738848.1|GD738848
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|208086296|gb|GD881962.1|GD881962
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|193512979|gb|FK470527.1|FK470527
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|193674611|gb|FK618207.1|FK618207
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|193693387|gb|FK634159.1|FK634159
EST:     AATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: AATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|208118566|gb|GD919635.1|GD919635
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|208042367|gb|GD838315.1|GD838315
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|208067774|gb|GD866128.1|GD866128
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|120495980|gb|EH224147.1|EH224147
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG-T-T                         TTT--CAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|193714506|gb|FK655077.1|FK655077
EST:     GGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: GGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|208320344|gb|GE122961.1|GE122961
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|120495784|gb|EH223951.1|EH223951
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG-T-T                         TTT--CAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|57575042|gb|CX548017.1|CX548017
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG-T-T                         TTT--CAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|208184959|gb|GD981165.1|GD981165
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|207790777|gb|GD761914.1|GD761914
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG-T-T                         TTT--CAAGTGGAGGTGAAGATGGT
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGT
EST: gi|7639005|gb|AW733337.1|AW733337
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAAGT-T                         TT---CAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|193408268|gb|FK371866.1|FK371866
EST:     CTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAAGGT-T                         TTTT-CAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACC
genomic: CTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-GGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACC
EST: gi|208298287|gb|GE095476.1|GE095476
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|208176396|gb|GD979037.1|GD979037
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|193699811|gb|FK641694.1|FK641694
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|193465837|gb|FK433750.1|FK433750
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
EST: gi|208143574|gb|GD942004.1|GD942004
EST:     ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAA-G---                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: ACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgtt ... tcttttgcagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGGTATgttctctgttcttcacctcccttttgttttgcttcatgacatacttttattcaatgaaaccttccgttcgttggagaaattgacaaccatgcttatgtta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctt