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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTATTACGCTGGTAGTCATGGAATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAATCACCTAAATTGCATTAGGTCTACAGACAAGCAGgtacagggagttgaaagtttctatctgcaatctgttttgtgaatatctctctcactttctgttctcttgaattatttcattaaatggcttctgttattatctttaaatttacag

Basic information

species Glycine max
transcript GLYMA09G36570.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36570.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os10g40550.1 (Oryza sativa), 5'ss of exon 6
ACTTTATTACGCTGGTAGTCATGGAATGGACATCATTGGCCCTGTTAGACAATCTGTATC---TGATAATCACCTAAATTGCATTAGGTCTACAGACAAGCAGgtacagggagttgaaagtttctatctgcaatctgttttgtgaatatctctctcact-ttctgttctcttgaattatttcattaaatggcttctgttattatctttaaatttacag
    ||||||||||| |||||||||||||| ||||| || ||||||||  | ||||  ||   || | | ||  |  | || || ||||| || ||     |||| ||     ||    | || | ||  ||  |         ||| |||||||          ||||  | | ||||| | ||   |||||  |                      
---GTATTACGCTGGAAGTCATGGAATGGATATCATGGGGCCTGTTAGGAAGTCTGATTCGAGTGGTCAGCATGTGGAATGTATCAGGTCCACTGATTCAGAGgtgcaacagctttgttgattttttccacagac--------aaatttctctcttgtgacaaaattctaattagttattgctttt--tggctcatag--------------------

upper sequence: GLYMA09G36570.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G178546_T01 (Zea mays), 5'ss of exon 5
ACTTTATTACGCTGGTAGTCATGGAATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAATCACCTAAATTGCATTAGGTCTACAGACAAGCAGgtacagggagttga-aagtttctatctgcaatctgt-tttgtgaatatctctctcactttctgttctcttgaattatttcattaaatggcttctgttattatctttaaatttacag
| | || |||||||| || |||||||||||||| || |||||||||||  |  ||         |||  | |  | || ||| |||| || ||   ||| ||  |   | ||   |  | | || |  |||| |   | | | | |  || ||| | | | | |  ||||  ||  |     ||                                
ATTGTACTACGCTGGAAGCCATGGAATGGACATAATGGGCCCTGTTAGGAAGACTACTGACTCCAATGGCGTGGAATGTATTCGGTCAACTGATGTGCATgtgaaactactttctagatctttaccctcaatttaaatgttttacttgctttcttagtgtgtatcttctt--atcctcctcgtag-------------------------------

upper sequence: GLYMA09G36570.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0022g00660.t01 (Vitis vinifera), 5'ss of exon 4
ACTTTATTACGCTGGTAGTCATGGAATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAATCACCTAAATTGCATTAGGTCTACAGACAAGCAGgtacagggagtt-gaaagtttctatc-tgcaatctgttt-tgtgaata---tctctctcactttctgttctcttgaatta-tttcattaaatggcttctgt-tattatctttaaatttacag--
 || || ||||||||||||||||| ||||||||||| |||||||| ||||| ||  | ||| || | || | |||||| |||||||  || |||||||||||||       | |||| | | | || || ||| | | | | |  |||   ||||| |||  |  | |  | || | ||  ||| | | | |  |   | | |||||| ||   ||  |     
GCTCTACTACGCTGGTAGTCATGGGATGGACATCATGGGCCCTGTCAGACACTCCATTTCTAATGACCATCCAAATTGTATTAGGTTAACTGACAAGCAGgtaccctagcctagaaactctttctcatgaaatatatatatatatatactatctctttcatatgttatgttatttatttggttttacttattcacccttttatattattttcttatgaatgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6566157|gb|AW233794.1|AW233794
EST:     AATCTGTATCTGATAATCACCTAAATTGCATTAGGTCTACAGACAAGCAG                         GGTAAGGAAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATT
genomic: AATCTGTATCTGATAATCACCTAAATTGCATTAGGTCTACAGACAAGCAGgtacagggag ... aaatttacagGGTAAGGAAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATT