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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTAATATTAACAAAAAATCATATTACAAAATTAAAAAATTGCGCAGGTGTTAATATGTTGATGAAGGCAGTGGGAAAAGATTGCACATCTCTATTCAgtatcccttttgtgatttagtaagattgtgagcgtccttcattttctgtctgttttaatttaatgttacctttggttagatttcactttattctgtcatt...

Basic information

species Glycine max
transcript GLYMA09G36160.2
intron # 4
splice site 5'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193461738|gb|FK426279.1|FK426279
EST:     GCACATCTTTATTCA                         ATAAATACCATGCTTGGGTTAATGCTGAATTCTTATTGGAAAAATGCTTTG
genomic: GCACATCTCTATTCAgtatcccttt ... cttgaatcagATAAATACCATGCTTGGGTTAATGCTGAATTCTTATTGGAAAAATGCTTTG
EST: gi|15664741|gb|BI702112.1|BI702112
EST:     GTTAATATGTTGATGAAGGCAGTGGGAAAAGATTGCACATCTCTATTCA                         ATAAATACCATGCTTGGGTTAATGCTGAATTCTTATTGGAAAAATGCTTTG
genomic: GTTAATATGTTGATGAAGGCAGTGGGAAAAGATTGCACATCTCTATTCAgtatcccttt ... cttgaatcagATAAATACCATGCTTGGGTTAATGCTGAATTCTTATTGGAAAAATGCTTTG
EST: gi|11687701|gb|BF595377.1|BF595377
EST:     GAAGGCAGTGGGAAAAGATTGCACATCTCTATTCA                         ATAAATACCATGCTTGGGTTAATGCTGAATTCTTATTGGAAAAATGCTTTG
genomic: GAAGGCAGTGGGAAAAGATTGCACATCTCTATTCAgtatcccttt ... cttgaatcagATAAATACCATGCTTGGGTTAATGCTGAATTCTTATTGGAAAAATGCTTTG