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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACTGGGTCTGCTTCCCAGGGAGAAATTTCATTCTTATCTTGGAACAGTAAAGTCCAACACATATTAGCGTCTACTTCATACAATGGGACCACAGgtgaggaaggaatttaatctatcctttatattctgttctcaatgttacatgtttggtggaatactatatatgttaatatacatattttggttttattttccag

Basic information

species Glycine max
transcript GLYMA09G36050.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36050.2 (Glycine max), 5'ss of exon 4
lower sequence: AT3G63460.1 (Arabidopsis thaliana), 5'ss of exon 4
AGTACTGGGTCTGCTTCCCAGGGAGAAATTTCATTCTTATCTTGGAACAGTAAAGTCCAACACATATTAGCGTCTACTTCATACAATGGGACCACAGgtgagg---aaggaatttaatctatc-ctttatattctgttct-caatgttacat--gtttggtggaatactatatatgttaat--atacatattttggttttattttccag---
 ||| ||| |||||| | || || ||||| || ||  |||| ||||| || ||||| ||||| |||||||| ||||| |||||||||||||| || ||||||    | ||  ||   ||| |  || ||| | ||   || | |  | || |  || |  |  | | ||   | || | ||   |   ||||||  |||| ||||||     
GGTAGTGGTTCTGCTACGCAAGGTGAAATCTCCTTTATATCGTGGAATAGAAAAGTTCAACAGATATTAGCTTCTACCTCATACAATGGGACTACTGgtgagacttaggggtttctctctctttctctatctacttgactactacttcacttctgtctactatatttctgcttctgctcatcagtctttattttcattttcttttcccccag

upper sequence: GLYMA09G36050.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 4
AGTACTGGGTCTGCTTCCCAGGGAGAAATTTCATTCTTATCTTGGAACAGTAAAGTCCAACACATATTAGCGTCTACTTCATACAATGGGACCACAGgtgaggaaggaatttaatctatcctttatattctgttctcaatgttacatgtttggtggaatactatatatgttaatatacatattttggttttattttccag
 ||| ||| ||||||   || || |||||||| |||||||||||||| || || |||||||| |||||||| || |||||||||||||| || || ||||||||||||   || |  |    |||| |  | | |    | ||   ||||||||   | ||  |  |  ||  | ||  | ||  |              
GGTAGTGGATCTGCTAATCAAGGTGAAATTTCTTTCTTATCTTGGAATAGCAAGGTCCAACATATATTAGCATCCACTTCATACAATGGAACAACTGgtgaggaaggataata-ttcacaacttatttattatccaatttatt-tttgtttggttttaaacattgcaaattt-tctattttttcag--------------