1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAGATGCCAATAACTTCAAGGGTCATTCAGGAGACTCTAAGAGTTGCTTCAATTTTGTCTTTTACTTTCAGAGAAGCAGTAGAGGATGTAGAATATCAAGgtcaataatcaaatctgatatttttagttaatttttaacccaagatctcctttccttttttttctcacagattctatgttggtaattgtttttctatag
species | Glycine max |
transcript | GLYMA09G35250.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATTTTGTCTTTTACTTTCAGAGAAGCAGTAGAGGATGTAGAATATCAAG GGTATCTTATTCCAAAAGGGTGGAAAGTGCTACCTCTATTTAGGAACATACEST: gi|8669820|gb|BE190927.1|BE190927
genomic: AATTTTGTCTTTTACTTTCAGAGAAGCAGTAGAGGATGTAGAATATCAAGgtcaataatc ... ttttctatagGGTATCTTATTCCAAAAGGGTGGAAAGTGCTACCTCTATTTAGGAACATAC
EST: AATTTTGTCTTTTACTTTCAGAGAAGCAGTAGAGGATGTAGAATATCAAG GGTATCTTATTCCAAAAGGGTGGAAAGTGCTACCTCTATTTAGGAACATACEST: gi|120494879|gb|EH223046.1|EH223046
genomic: AATTTTGTCTTTTACTTTCAGAGAAGCAGTAGAGGATGTAGAATATCAAGgtcaataatc ... ttttctatagGGTATCTTATTCCAAAAGGGTGGAAAGTGCTACCTCTATTTAGGAACATAC
EST: ATTTTGTCTTTTACTTTCCAGAGAAGCAGTAGAGGATGTAGAATATCAAG GGTATCTTATTCCAAAAGGGTGGAAAGTGCTACCTCTATTTAGGAACATACEST: gi|151407230|gb|EV277045.1|EV277045
genomic: ATTTTGTCTTTTACTTT-CAGAGAAGCAGTAGAGGATGTAGAATATCAAGgtcaataatc ... ttttctatagGGTATCTTATTCCAAAAGGGTGGAAAGTGCTACCTCTATTTAGGAACATAC
EST: AATTTTGTCTTTTACTTTCAGAGAAGCAGTAGAGGATGTAGAATATCAAG GGTATCTTATTCCAAAAGGGTGGAAAGTGCTACCTCTATTTAGGAACATAC
genomic: AATTTTGTCTTTTACTTTCAGAGAAGCAGTAGAGGATGTAGAATATCAAGgtcaataatc ... ttttctatagGGTATCTTATTCCAAAAGGGTGGAAAGTGCTACCTCTATTTAGGAACATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGATGCCAATAACTTCAAGGGTCATTCAGGAGACTCTAAGAGTTGCTTCAATTTTGTCTTTTACTTTCAGAGAAGCAGTAGAGGATGTAGAATATCAAGgtcaataatcaaatctgatatttttagttaatttttaacccaagatctcctttccttttttttctcacagattctatgttggtaattgtttttctatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG