Sequence
atgc intronic sequence ATGC exonic sequenceATTGTATGTCACTCCAGAAAAGATTTCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATgtgagttcataatcatatgctctatagacttgttctgaattatatttgtcaaaatcatcttttttatgaatgcctatggttgctgacaagttgattttaa...
Basic information
species | Glycine max |
transcript | GLYMA09G34860.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G34860.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G451856_T02 (Zea mays), 5'ss of exon 5
ATTGTATGTCACTCCAGAAAAGATTTCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATgtgagt--tcataatcatatgctctatagacttgttctgaattatatttgtcaaaatcatcttttttatgaatgcctatggttgctgacaagttgattttaa---
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ATTATATGTGACACCTGAAAAGATCTCAAAAAGTAAAAGGTTCATGTCTAAGCTCGAGAAATGCCATCATGCCGGTCGTCTTTCTCTGATTGCAATAGATgttagtaattacaagcttatcttttttt--tttgtcagcaatgcccacagttat--tcatgacatttacatat-cctggtttctctcaaaaaaggatcctttttg
upper sequence: GLYMA09G34860.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 4
ATTGTATGTCACTCCAGAAAAGATTTCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATgtgagttcataatcatatgctctatagacttgttctgaattatatttgtcaa-aatcatcttttttatgaatgc--ctatggttgctgacaagttgattttaa
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ACTGTATGTCACACCTGAAAAGATATCAAAGAGCAAGAGATTCGTGTCAAAACTTGAAAAGTGTCATCATTCTGGTTGTCTCTCCCTCATTTCAATTGATgtgagt--attagtttttgcctttttttctcgacttgatctggaacaatggataatttttttttccatcattttagtagtaattacttgctt-tccatttcaa
upper sequence: GLYMA09G34860.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S93_66V6.1 (Physcomitrella patens), 5'ss of exon 5
ATTGTATGTCACTCCAGAAAAGATTTCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATgtgagtt---cataatcat---atgctc-tatagacttgttctgaattatatttg---tcaaaatcatctttttt--atgaat---gcctatggt--tgctgacaagttgattttaa--------------------
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TTTGTATGTTACTCCTGAGAAGGTTGCAAAAAGCAAACGGTTTGTATCAAAGCTGGAAAAGTGCAATCACGGCGGCCGTCTCTCTCTAATAGCTATTGATgtgagttgcgcctatctatttcatgttcacatcaccttactcttg-ttagattaggcttcagggttattattttttaacgaattacgtttactgtaatatcaaagcactgatttcgaaattttcctccttgttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16276851|gb|BI942077.1|BI942077EST: AACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGAT GAAGCACATTGCTGTAGTCAATGGGGTCATGACTTTCGACCTGACTACAAG
genomic: AACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATgtgagttcat ... tgcattgcagGAAGCACATTGCTGTAGTCAATGGGGTCATGACTTTCGACCTGACTACAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGTATGTCACTCCAGAAAAGATTTCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATgtgagttcataatcatatgctctatagacttgttctgaattatatttgtcaaaatcatcttttttatgaatgcctatggttgctgacaagttgattttaa
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