Sequence
atgc intronic sequence ATGC exonic sequenceGCTGTTCTTGGTGTCATTTCTACACAGAGACTTCCTTTCCCATCAAACTCCTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATTTGgtaattcttcagtgcatattggattttatcaattaaacataaatcattaattcttgtttatgctacattgttatgaatttctgtaatgagttttaattgg...
Basic information
species | Glycine max |
transcript | GLYMA09G34640.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G34640.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G31850.3 (Arabidopsis thaliana), 5'ss of exon 4
GCTGTTCTTGGTGTCATTTCTACACAGAGACTTCCTTTCCCATCAAACTCCTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATTTGgtaattcttcagtgcatattggattttatcaattaaacataaatcattaattcttgtttatgctac--attgttatgaatttctgtaatgagttttaattgg
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GCGATTCTCGGGATCATCTCTACGCAACGTCTCCCTTTTCCTTCAAATGCATTTGATATGGCTCATTGTTCAAGATGTCTTATTCCCTGGACAGAATTTGgtaa-----------gcactaatatctacctaccaa-tgcatttgagttgttgtgatttgaactaagaataatcatcaaaatgtgttctccgatcttgcag-
upper sequence: GLYMA09G34640.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 5
GCTGTTCTTGGTGTCATTTCTACACAGAGACTTCCTTTCCCATCAAACTCCTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATTTGgtaattcttcagtgcatattggattttatcaattaaacataaatc---attaattcttgtttatgctacattgtta-tgaatttctgtaatgagttttaattgg
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GCGATCCTTGGCATCATTTCCACTCAGCGGCTTCCTTTCCCCTCCAACTCATTTGATATGGCTCATTGCTCAAGATGCCTTATCCCATGGACTGAATTTGgtaattcctctcttc-catataatgataagtctcagatgtaaatttggacaaaattacattatcaataagttgtcgctgaggttcattggttgatcatata---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8283269|gb|BE020830.1|BE020830EST: CTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATTTG GTGGTATTTATCTCATGGAAATACACCGTATTCTTCGTCCTGGAGGATTTT
genomic: CTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATTTGgtaattcttc ... ttgcttttagGTGGTATTTATCTCATGGAAATACACCGTATTCTTCGTCCTGGAGGATTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGTTCTTGGTGTCATTTCTACACAGAGACTTCCTTTCCCATCAAACTCCTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATTTGgtaattcttcagtgcatattggattttatcaattaaacataaatcattaattcttgtttatgctacattgttatgaatttctgtaatgagttttaattgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA