1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AGAATTTCACTTCTGTCTCTGTAATGCAAGCTATTGGCTCTATCATTACTAACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaactttcactttcactttgtgtgtgcgcttttcatgatattttgtggaatttgaagccaataaatacagacatatatatagtgttgacattttgaatagtataattgggtgtcggtattcaaagattgtggatctttatttattatttcag
species | Glycine max |
transcript | GLYMA09G33480.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|208263551|gb|GE063811.1|GE063811
genomic: GGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|193438324|gb|FK400033.1|FK400033
genomic: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: CCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|207839851|gb|GD810044.1|GD810044
genomic: CCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|193392902|gb|FK359678.1|FK359678
genomic: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: AATGAAGGATATTCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|193712073|gb|FK648816.1|FK648816
genomic: AATGAAGGATA-TCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|208217137|gb|GE008617.1|GE008617
genomic: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|193469321|gb|FK437627.1|FK437627
genomic: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|193588700|gb|FK540098.1|FK540098
genomic: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|207765710|gb|GD735955.1|GD735955
genomic: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|193408671|gb|FK374173.1|FK374173
genomic: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: AATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|208083475|gb|GD883985.1|GD883985
genomic: AATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: GGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|193367587|gb|FK332049.1|FK332049
genomic: GGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: AATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAAACGTGCCTTGGAAGCATEST: gi|207789742|gb|GD763456.1|GD763456
genomic: AATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTC-AAAAACGTGCCTTGGAAGCAT
EST: AACACTCGGAATGAAGGATATCCCGGTGCAAGATGTTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|208025377|gb|GD823425.1|GD823425
genomic: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: CCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|207779220|gb|GD750750.1|GD750750
genomic: CCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|193515317|gb|FK472879.1|FK472879
genomic: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGEST: gi|193595490|gb|FK554355.1|FK554355
genomic: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAG
EST: AACACTCGGAACGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTAAAGCCTTGGAAGCEST: gi|208209401|gb|GE003853.1|GE003853
genomic: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGT---GCCTTGGAAGC
EST: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|193471231|gb|FK438124.1|FK438124
genomic: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATCGTCAAAA-CGTGCCTTGEST: gi|193633479|gb|FK579649.1|FK579649
genomic: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTAT-GTCAAAAACGTGCCTTG
EST: AAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATCGTC-AAAACGTGCCTTGGAAGCATEST: gi|208310329|gb|GE105549.1|GE105549
genomic: AAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTAT-GTCAAAAACGTGCCTTGGAAGCAT
EST: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGEST: gi|193308001|gb|FK272023.1|FK272023
genomic: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATG
EST: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTEST: gi|193628730|gb|FK574570.1|FK574570
genomic: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
EST: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGA GTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
genomic: AACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaa ... attatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATTTCACTTCTGTCTCTGTAATGCAAGCTATTGGCTCTATCATTACTAACACTCGGAATGAAGGATATCCCGGTGCAAGATATTATGGGGGAAATGAgtatgtcaaactttcactttcactttgtgtgtgcgcttttcatgatattttgtggaatttgaagccaataaatacagacatatatatagtgttgacattttgaatagtataattgggtgtcggtattcaaagattgtggatctttatttattatttcag
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