1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ACAACTTTGAAGGCGCTTTCTGGAGCAGTGTCCTATATAGATTCTGTTCATCATGAATCCCTGCTCTTTGCTgtaagattttttttacggtggatgtgtttgagacttcaaatttatttctctatggttggtgatttaaggatatgattgattttgataatttttttgtccag
species | Glycine max |
transcript | GLYMA09G32870.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCATGAATCCCTGCTCTTTGCT GTTTCGAGAATGAGCCTCTGGAATTGTGGAATTGATATTATGGATGCACTGEST: gi|213587972|gb|DB971447.1|DB971447
genomic: TCATGAATCCCTGCTCTTTGCTgtaagatttt ... ttttgtccagGTTTCGAGAATGAGCCTCTGGAATTGTGGAATTGATATTATGGATGCACTG
EST: GAGCAGTGTCCTATATAGATTCTGTTCATCATGAATCCCTGCTCTTTGCT GTTTCGAGAATGAGCCTCTGGAATTGTGGAATTGATATTATGGATGCACTGEST: gi|308098160|gb|HO761331.1|HO761331
genomic: GAGCAGTGTCCTATATAGATTCTGTTCATCATGAATCCCTGCTCTTTGCTgtaagatttt ... ttttgtccagGTTTCGAGAATGAGCCTCTGGAATTGTGGAATTGATATTATGGATGCACTG
EST: GAGCAGTGTCCTATATAGATTCTGTTCATCATGAATCCCCGCTCTTTGCT GTTTCGAGAATGAGCCTCTGGAATTGTGGAATTGATATTATGGATGCACTGEST: gi|213598076|gb|DB972264.1|DB972264
genomic: GAGCAGTGTCCTATATAGATTCTGTTCATCATGAATCCCTGCTCTTTGCTgtaagatttt ... ttttgtccagGTTTCGAGAATGAGCCTCTGGAATTGTGGAATTGATATTATGGATGCACTG
EST: GAGCAGTGTCCTATATAGATTCTGTTCATCATGAATCCCTGCTCTTTGCT GTTTCGAGAATGAGCCTCTGGAATTGTGGAATTGATATTATGGATGCACTG
genomic: GAGCAGTGTCCTATATAGATTCTGTTCATCATGAATCCCTGCTCTTTGCTgtaagatttt ... ttttgtccagGTTTCGAGAATGAGCCTCTGGAATTGTGGAATTGATATTATGGATGCACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAACTTTGAAGGCGCTTTCTGGAGCAGTGTCCTATATAGATTCTGTTCATCATGAATCCCTGCTCTTTGCTgtaagattttttttacggtggatgtgtttgagacttcaaatttatttctctatggttggtgatttaaggatatgattgattttgataatttttttgtccag
- - - - - - - - - - - GAGCAG