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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGCTACTTGCTGTTGAGGGTTGTGCAGCTCTGGGGAAATTGTTGGAACCTCAAGATTGCGTGGCACATATTCTTCCTGTCATAGTCAATTTTTCTCAGgtttgttggccattagtaatactgatacactgatactatatatgtagagactagaggtatatcttccatatccattttgtggccaacactaatgagagga...

Basic information

species Glycine max
transcript GLYMA09G31760.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G31760.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g07510.1 (Oryza sativa), 5'ss of exon 4
TCGGCTACTTGCTGTTGAGGGTTGTGCAGCTCTGGGGAAATTGTTGGAACCTCAAGATTGCGTGGCACATATTCTTCCTGTCATAGTCAATTTTTCTCAGgtttgttggccattagtaatactgatacactgatactatatatgtag----agactagaggtatatcttcc-atatccatt--ttg-tggccaacactaatgagagga-----------------------------------------------------------------
 ||  |  | || ||||| || ||||| ||||| ||||||||||||||||| |||||||| || |||||||| ||||| || || |||||||| || |||||   ||   ||    || |  || |||     |   || ||  |      | |    |  | ||| | |  | || ||||  ||| | |      || |||    ||                                                                 
ACGCTTGTTGGCAGTTGAAGGCTGTGCTGCTCTTGGGAAATTGTTGGAACCACAAGATTGTGTAGCACATATCCTTCCAGTTATTGTCAATTTCTCCCAGgtaaatta--cacccctact--tggtacctcagtgtcatctacttgatatcacatataatatttatttgcagacattcattagttgctagaggttcctgatgctccgagttgcttctgttgtatgtgttaccataattatgacatcttttactctctgtaactcattaaatag

upper sequence: GLYMA09G31760.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 4
TCGGCTACTTGCTGTTGAGGGTTGTGCAGCTCTGGGGAAATTGTTGGAACCTCAAGATTGCGTGGCACATATTCTTCCTGTCATAGTCAATTTTTCTCAGgtttgttggccattagtaatactgataca--------ctgatactatatatgtagagactagaggtat-atcttccatatccattttgtggccaacactaatgagagga
 || ||  | |||||||| || ||||| || || || |||||||||||||| ||||||||||| ||||| |||||||| ||||| |||||||| || |||||   |||  |    ||   ||  |||||        |   || | |   |     | || ||  ||| ||   ||| | ||     ||||      | |         
GCGTCTGTTGGCTGTTGAAGGCTGTGCTGCCCTTGGTAAATTGTTGGAACCACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgctcccatgttggacccatacatcctgcagcaagtaatttgctttctttgtctggaaatattattccccagaccccacccgtgggagcttcca---------

upper sequence: GLYMA09G31760.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 4
TCGGCTACTTGCTGTTGAGGGTTGTGCAGCTCTGGGGAAATTGTTGGAACCTCAAGATTGCGTGGCACATATTCTTCCTGTCATAGTCAATTTTTCTCAGgtttgttgg-ccattagtaatactgatacact----gatactatatatgtagagactagaggtatatcttccatatccat-tttgtggccaacactaatgagagga------------------------------------------------------------------------------------------
 ||  |  | |||||||| |||||||| ||||| || ||||||||||| || |||||||| || || || |||||||| ||||| |||||||| || |||||   |||  ||  |  |    |  ||||| |       |    || ||       |   | |||||  |    |  ||| ||| | |     |    |                                                                                                 
GCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAAATTGTTGGAGCCACAAGATTGTGTAGCTCACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgctcccatgttggaccctatacattttgcagcaagtaatttgctttctttgtggatatattattgggagacatgtttttagttgctagaggttgataatttctcggagtcgcctcttagttttgcaacttgctgcagttcagtgcattaccgctgataaatgctacttgcatatactcgctttgtttag

upper sequence: GLYMA09G31760.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G102858_T01 (Zea mays), 5'ss of exon 4
TCGGCTACTTGCTGTTGAGGGTTGTGCAGCTCTGGGGAAATTGTTGGAACCTCAAGATTGCGTGGCACATATTCTTCCTGTCATAGTCAATTTTTCTCAGgtttgttggccattagtaatactgatacactgatactatatatgtagagactagaggtata-tcttccatatccatt-ttgtggccaacactaatgagagga---------------------------------------------------------------------------------------------------------
 || ||| | || |||||||||||||| ||||| ||||| |||||||| || |||||||| |  ||||||||||| || || || || ||||| |||||||| | |          | | ||   |    ||     ||| |||| | ||  | || || | |  || |||   ||| | ||    |  ||||  |  ||                                                                                                           
GCGACTATTGGCAGTTGAGGGTTGTGCTGCTCTTGGGAAGTTGTTGGAGCCCCAAGATTGTGCAGCACATATTCTCCCAGTTATTGTAAATTTCTCTCAGgtatatc---------ttacacacttttggtggcttaataaatgttgggagaaaagataaagttgtcaatactaattctcgtaaaaattactagagtaagatttccataagatctgctactagacaataatttcatgtgcttaagtttcagcacactaccatacatggttaatgatttcaattgcttatgttttcttaacatctcag

upper sequence: GLYMA09G31760.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0038g00200.t01 (Vitis vinifera), 5'ss of exon 1
---------------------------------------TCGGCTACTTGCTGTTGAGGGTTGTGCAGCTCTGGGGAAATTGTTGGAACCTCAAGATTGCGTGGCACATATTCTTCCTGTCA-TAGTCAATTTTTCTCAGgtttgttggccattagtaatactgatacactgatactatatatgtagagactagaggtatatcttccatatccattttgtggccaacactaatgagagga
                                       | || || | |||||| |||||||||||||||| || ||| ||||||||||||||||||| || ||||||||||||||  | | |  | ||||| ||||||                                                                                                    
AATATTTGAGGATCTGACACAGGATGATCAAGATTCTGTTAGGTTATTGGCTGTTAAGGGTTGTGCAGCTCTCGGAAAACTGTTGGAACCTCAAGATTGTgtagcacatattcttcccataaattatgaatttctctcag----------------------------------------------------------------------------------------------------

upper sequence: GLYMA09G31760.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv17s0000g03870.t01 (Vitis vinifera), 5'ss of exon 5
TCGGCTACTTGCTGTTGAGGGTTGTGCAGCTCTGGGGAAATTGTTGGAACCTCAAGATTGCGTGGCACATATTCTTCCTGTCATAGTCAATTTTTCTCAGgtttgttggccattagtaatactgatacactgatactatatatgtagagactagaggtatatcttccatatccattttgtggccaaca-ctaatgagagga---
| || || | ||||||||||||||||||||||| || ||  ||||||||||||||||||| || |||||||||||||| || || || ||||| ||||||||   |     |  |||   |    |  |   | | | ||| |  |  || | |   |||   |    ||    || | ||  |  || || ||| |   |   
TAGGTTATTGGCTGTTGAGGGTTGTGCAGCTCTCGGAAAGCTGTTGGAACCTCAAGATTGTGTAGCACATATTCTTCCCGTAATTGTGAATTTCTCTCAGgtacatccataa--agttggatatgttaatcaacatt-tatttccatggatttgct-tattcatattttaaagtttctttgatcttcatcttatgtgttcaagt

upper sequence: GLYMA09G31760.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0008g07090.t01 (Vitis vinifera), 5'ss of exon 2
-----------------------------------------TCGGCTACTTGCTGTTGAGGGTTGTGCAGCTCTGGGGAAATTGTTGGAACCTCAAGATTGCGTGGCACATATTC-TTCCTGTCATAGTCAATTTTTCTCAGgtttgttggccattagtaatactgatacactgatactatatatgtagagactagaggtatatcttccatatccattttgtggccaacactaatgagagga
                                         | || || | |||||| |||||||||||||||| || ||| ||||||||||||||||||| || |||||||||  || ||  || |   || |  | |    ||||| | ||  || ||||| || |    | |     | |   |||  |  | |   || |   |||                                
TCAATATTTGAGGATCTGACACAGGATGATCAAGATTCTATTAGGTTATTGGCTGTTAAGGGTTGTGCAGCTCTCGGAAAACTGTTGGAACCTCAAGATTgtgtagcacatattgattactaccaaa---aagtgctat----tttgtagacc--taataataatggttt--taagcacctttgaatagtaatcatattcatttaacccaa-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207792759|gb|GD767451.1|GD767451
EST:     CTCAAGATTGCGTGGCACATATTCTTCCTGTCATAGTCAATTTTTCTCAG                         GATAAGTCATGGCGTGTTCGTTACATGGTTGCTAAT
genomic: CTCAAGATTGCGTGGCACATATTCTTCCTGTCATAGTCAATTTTTCTCAGgtttgttggc ... tcttatccagGATAAGTCATGGCGTGTTCGTTACATGGTTGCTAAT